Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18m03
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    29   0.40 
SPAC13G7.11 |||mitochondrial inner membrane protein|Schizosaccha...    27   2.1  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   2.1  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    25   6.5  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    25   6.5  
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    25   6.5  
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac...    25   8.6  

>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = -3

Query: 339 SIASLCGRFLRLHDTYYRFICTWRYGWILYFFDTNCNAGGWWW 211
           S+ S C  F   HD      C W    + YFF     +  W+W
Sbjct: 244 SVLSSCALFKIFHDNDNTKACNWTISRLRYFFIVFVASFIWYW 286


>SPAC13G7.11 |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 269

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -3

Query: 177 DTSFFLLFYSLQGARVWWRWLRY-WFDI 97
           +TSFFL  +  +  R WWR+L Y W+++
Sbjct: 63  NTSFFL--HPFKKIRFWWRYLFYGWWNL 88


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +3

Query: 117 ATSTKPLHLATNKTKGKSWYQNMSKDSCRTTATTSPLRCNLYRKNKESTRTSK 275
           A  +KP+  A   +K  SW  +  + + +T  TTS LR  +     ++ R  K
Sbjct: 182 ANISKPVVQAQKDSKDNSWDDSSKQSNTQTANTTSNLRVPVNASWSDAGRKEK 234


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 169 LFPFVLFVARCKGLVEVAQVLVRHC 95
           ++P     A+  GL E AQ ++ HC
Sbjct: 761 MYPIAYLTAKSNGLEEKAQQILSHC 785


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 5/21 (23%), Positives = 13/21 (61%)
 Frame = -3

Query: 261 WILYFFDTNCNAGGWWWRLFY 199
           W+L+++   C + GW++   +
Sbjct: 528 WVLFYYYRGCQSWGWYYNYHF 548


>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
 Frame = -3

Query: 222 GWWWR--LFYRNPWTYFDTSFFLLFYSLQ-GARVWWRWLRYWF 103
           GW+W   +++ + W          F S    A +WW ++  WF
Sbjct: 68  GWFWTSLVYFYHAWDQKRNKIDFKFISRYIVATLWWMFVTQWF 110


>SPBC3H7.15 |hhp1||serine/threonine protein kinase
           Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/76 (19%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
 Frame = -2

Query: 478 FVFCTLRFSVSSAVLRKGRILVEVEV---KGWAHNQARVDQGVQQLHPK*HRISLWSFSP 308
           F FC  +FS+ + +L   +++  +E    K + H   + D  +  +  + +++++  F  
Sbjct: 95  FNFCNRKFSLKTVLLLADQLISRIEFIHSKSFLHRDIKPDNFLMGIGKRGNQVNIIDFGL 154

Query: 307 VARH-IL*VHLHLEVR 263
             ++     HLH+  R
Sbjct: 155 AKKYRDHKTHLHIPYR 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,395,229
Number of Sequences: 5004
Number of extensions: 47247
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)