Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18m01
(633 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch... 85 8e-18
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 31 0.14
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 27 2.3
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz... 27 3.0
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 3.9
SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyce... 26 5.2
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 25 9.1
SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu... 25 9.1
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.1
SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.1
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun... 25 9.1
>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 85.0 bits (201), Expect = 8e-18
Identities = 49/170 (28%), Positives = 89/170 (52%), Gaps = 6/170 (3%)
Frame = +2
Query: 140 FTWVEYLWEQYLSLRQLKIYKTNNTIPEDLKEMLNEDLFKKARLYGIDKAQFKIVKELYS 319
F+ +Y W+ YL RQ+ Y P L E ++E ++KA Y DK+ F + ++
Sbjct: 55 FSIGKYAWDLYLRRRQVP-YLLREKPPAILAEHVDEKKYQKALSYARDKSWFSTIVSTFT 113
Query: 320 TILTSVILYNKWIYVAWRKS-----EQIGAMFN-ISPDREIIISCIFMTFITLFNFIVNK 481
+ +I+ + W + +++ A + S I SC+FM +TLF+ ++
Sbjct: 114 LAVDLLIIKYDGLSYLWNITKFPWMDKLAASSSRFSLSTSITHSCVFMFGLTLFSRLIQI 173
Query: 482 PFTIYGVFVLEERHGFNKQTVRFFIKDQIKSLFLSLVITLPIISVAIYII 631
PF +Y FV+EE++GFNK T++ F+ D +K L L ++ ++ V + I+
Sbjct: 174 PFNLYSTFVIEEKYGFNKSTLKIFVIDLLKELSLGGLLMSVVVGVFVKIL 223
>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 540
Score = 31.1 bits (67), Expect = 0.14
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 192 RFTKLIIPSQKT*KKCSMRTCLRRHDFMELIKRSSK*SRN 311
+F ++ P +T +KC R C HDF K S S N
Sbjct: 7 QFKHIVCPFLRTGRKCQSRNCFFSHDFQNSTKISPPYSEN 46
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 404 ISPDREIIISCIFMTFITLFNFIVNKPF-TIYGV 502
++P+ + C+F +T F+ +V PF TI GV
Sbjct: 432 LTPEVSAVTLCLFWNKMTRFSLVVGAPFGTITGV 465
>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 265
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +2
Query: 233 EMLNEDLFKKARLYGIDKAQFKIVKELYSTILTSVILYNKWIYV 364
++ N D+ ++ + ++F + + T +I +NKWIY+
Sbjct: 31 KLRNGDVLQEVTESLTEDSEFNYIVNESQNVSTRLIFWNKWIYI 74
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/57 (21%), Positives = 26/57 (45%)
Frame = +2
Query: 197 YKTNNTIPEDLKEMLNEDLFKKARLYGIDKAQFKIVKELYSTILTSVILYNKWIYVA 367
Y N +IP+ L + N F + + + ++ +LY + S++ + Y+A
Sbjct: 4055 YFENLSIPKPLPFLSNNGKFMSSMMSTVSLPSVRLACQLYGVSIQSLVFFTWGYYIA 4111
>SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 351
Score = 25.8 bits (54), Expect = 5.2
Identities = 21/69 (30%), Positives = 33/69 (47%)
Frame = +2
Query: 173 LSLRQLKIYKTNNTIPEDLKEMLNEDLFKKARLYGIDKAQFKIVKELYSTILTSVILYNK 352
+S R L I K NN P L + NE L K A +++ + E ++TIL V L +
Sbjct: 209 ISTRSLLI-KNNNFAPF-LLDAWNEPLLKSAGFDQAERSALSHLLEAHNTILDHVALVSP 266
Query: 353 WIYVAWRKS 379
+ ++ S
Sbjct: 267 KVLNSYTNS 275
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 298 NSQGTVQYNTNISNIVQ*MDLCCMEEK*TNW 390
N + + Q N+S + + LCC EK T W
Sbjct: 330 NGKESYQQRVNLSPHEEILGLCCDHEKNTYW 360
>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 470 IVNKPFTIYGVFVLEERHGFNKQTVRFFI 556
+ N+P YG F L+E+ F VR F+
Sbjct: 154 LCNEPVETYGSFDLKEKVAFILDQVRLFL 182
>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 646
Score = 25.0 bits (52), Expect = 9.1
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -3
Query: 313 QFLDYFELRFINSIKSCLLKQVLIEHFFQVFWDGIISF 200
QFLD + +++ SC LK LI H F W I F
Sbjct: 308 QFLDKVFISLLSAKNSCSLKMWLI-HSFNKGWPVKIEF 344
>SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 129
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 104 NSLLFNSIRIFIFLNNFL 51
NS+L+N I IFIF N L
Sbjct: 102 NSVLYNDILIFIFANFIL 119
>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 470 IVNKPFTIYGVFVLEERHGFNKQTVRFFI 556
+ N+P YG F L+E+ F VR F+
Sbjct: 154 LCNEPVETYGSFDLKEKVAFILDQVRLFL 182
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,593,102
Number of Sequences: 5004
Number of extensions: 53595
Number of successful extensions: 167
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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