Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18m01
(633 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81461-8|CAB03839.1| 442|Caenorhabditis elegans Hypothetical pr... 98 5e-21
U88169-5|AAB42235.2| 367|Caenorhabditis elegans Hypothetical pr... 29 2.1
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 29 2.8
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 29 2.8
AF106575-3|AAC78173.2| 287|Caenorhabditis elegans Hypothetical ... 29 2.8
AF106575-2|AAQ62448.1| 506|Caenorhabditis elegans Hypothetical ... 29 2.8
U42830-5|AAC48280.2| 437|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z79605-2|CAB01903.1| 342|Caenorhabditis elegans Hypothetical pr... 28 4.8
AF106575-4|AAC78172.2| 548|Caenorhabditis elegans Hypothetical ... 28 6.4
AC087078-5|AAK66024.2| 191|Caenorhabditis elegans Hypothetical ... 28 6.4
Z74028-1|CAA98424.1| 334|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z66561-7|CAB54206.2| 419|Caenorhabditis elegans Hypothetical pr... 27 8.4
AL034488-6|CAA22450.2| 467|Caenorhabditis elegans Hypothetical ... 27 8.4
AF304127-1|AAG50240.1| 419|Caenorhabditis elegans innexin protein. 27 8.4
>Z81461-8|CAB03839.1| 442|Caenorhabditis elegans Hypothetical
protein C04F12.10 protein.
Length = 442
Score = 97.9 bits (233), Expect = 5e-21
Identities = 49/175 (28%), Positives = 91/175 (52%)
Frame = +2
Query: 107 DEDAILYLILLFTWVEYLWEQYLSLRQLKIYKTNNTIPEDLKEMLNEDLFKKARLYGIDK 286
D + +L W +LW+QY++ RQ K +K P ++KE++ E+ +KKAR Y ID
Sbjct: 2 DASCLFKALLATNWALFLWDQYITFRQYKAHKNAVKRPNEVKELIGEEDYKKARDYKIDN 61
Query: 287 AQFKIVKELYSTILTSVILYNKWIYVAWRKSEQIGAMFNISPDREIIISCIFMTFITLFN 466
F ++ +L + L + W + A + + +F++ ++
Sbjct: 62 HLFGFFHSWFNQLLLTAQLIGGYYPFLWYAT----ASYPLH-------VAVFLSINSIIE 110
Query: 467 FIVNKPFTIYGVFVLEERHGFNKQTVRFFIKDQIKSLFLSLVITLPIISVAIYII 631
I++ P+ +Y F++E+ HGFNKQT+ F+ D+IK + + +T+PI+ +II
Sbjct: 111 TIIDLPWDLYSTFIIEDAHGFNKQTIGFYFVDKIKKMLVGFALTMPIVYGIEWII 165
>U88169-5|AAB42235.2| 367|Caenorhabditis elegans Hypothetical
protein T03F1.7 protein.
Length = 367
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 140 FTWVEYLWEQYLSLRQLKIYKTNNTI-PEDLKEMLNEDLFKKARL 271
F +E + Q RQ + K T+ PE+L++ L++DL KK R+
Sbjct: 242 FEVLEKVCRQVFHYRQKYVTKGLKTLYPEELEDELSDDLLKKCRI 286
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +2
Query: 146 WVEYLWEQYLSLRQLKIYKTNNTIPEDLKEMLNEDLFKKARLYGIDKAQFKIVKELYSTI 325
W Y +QY QLK+ +T NT E +E+LN A L + ++ KE +
Sbjct: 803 WDSYKVDQY----QLKLAETVNTYQERCEELLNVVRIVNADLNVLKSCRYD--KETIENL 856
Query: 326 LTSV 337
LTS+
Sbjct: 857 LTSI 860
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +2
Query: 146 WVEYLWEQYLSLRQLKIYKTNNTIPEDLKEMLNEDLFKKARLYGIDKAQFKIVKELYSTI 325
W Y +QY QLK+ +T NT E +E+LN A L + ++ KE +
Sbjct: 803 WDSYKVDQY----QLKLAETVNTYQERCEELLNVVRIVNADLNVLKSCRYD--KETIENL 856
Query: 326 LTSV 337
LTS+
Sbjct: 857 LTSI 860
>AF106575-3|AAC78173.2| 287|Caenorhabditis elegans Hypothetical
protein K04F1.14a protein.
Length = 287
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 556 NKESYSLLIKSMSFLKNKHTINGKWF 479
N E Y+ ++++SF KN TING+ F
Sbjct: 105 NLEVYNTELQNLSFFKNLQTINGQLF 130
>AF106575-2|AAQ62448.1| 506|Caenorhabditis elegans Hypothetical
protein K04F1.14b protein.
Length = 506
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 556 NKESYSLLIKSMSFLKNKHTINGKWF 479
N E Y+ ++++SF KN TING+ F
Sbjct: 220 NLEVYNTELQNLSFFKNLQTINGQLF 245
>U42830-5|AAC48280.2| 437|Caenorhabditis elegans Hypothetical
protein C53B7.7 protein.
Length = 437
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -1
Query: 501 TP*MVNGLLTIKLNNVINVIKMQLIIISLSGEMLN-IAPICSLFLH 367
TP ++N LT ++ N+ N IKM + + + + N ++PI + FL+
Sbjct: 157 TPWVINNNLTEEMKNITNAIKMPVSLTKYTNFIYNLLSPIETDFLN 202
>Z79605-2|CAB01903.1| 342|Caenorhabditis elegans Hypothetical
protein ZK678.2 protein.
Length = 342
Score = 28.3 bits (60), Expect = 4.8
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = -1
Query: 474 TIKLNNVINVIKMQLIIISLSGEMLNIAPICSLFLHAT*IHLLYNITDVSIVLYSSLTIL 295
++KL N NVIK QL+ G M+ + +L + N TD++I LY TIL
Sbjct: 219 SLKLENFANVIKSQLV-----GRMIQLRVTKEEYLLMA-VLFACNPTDINISLYGK-TIL 271
Query: 294 N 292
N
Sbjct: 272 N 272
>AF106575-4|AAC78172.2| 548|Caenorhabditis elegans Hypothetical
protein K04F1.13 protein.
Length = 548
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 550 ESYSLLIKSMSFLKNKHTINGKW 482
E Y+ ++ +SFL+N TI+G W
Sbjct: 227 EVYNTSLQDLSFLENLETISGNW 249
>AC087078-5|AAK66024.2| 191|Caenorhabditis elegans Hypothetical
protein Y34F4.5 protein.
Length = 191
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 254 FKKARLYGIDKAQFKIVKELYSTILTSVILYNKWIYV 364
F A +YG + KI K YS + S+ Y KW ++
Sbjct: 71 FMVALMYGFIVYETKIKKRQYSKEILSLFYYFKWFFL 107
>Z74028-1|CAA98424.1| 334|Caenorhabditis elegans Hypothetical
protein C14C10.1 protein.
Length = 334
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 293 FKIVKELYSTILT--SVILYNKWIYVAWRKSEQIGAMFNISP 412
++I K +Y ++L+ + Y W+Y+A S + A F ++P
Sbjct: 111 YEIFKNVYGSMLSEENAYTYRSWVYLAAASSAEFFADFFLAP 152
>Z66561-7|CAB54206.2| 419|Caenorhabditis elegans Hypothetical
protein F08G12.10 protein.
Length = 419
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Frame = -3
Query: 307 LDYFELRFINSIKSCLLKQVLIEHFFQV---FW 218
++YF L+ + I +C+L+ VL++HF V FW
Sbjct: 184 INYFLLK-LGFIVNCILQMVLLKHFLDVDDYFW 215
>AL034488-6|CAA22450.2| 467|Caenorhabditis elegans Hypothetical
protein Y54G11A.7 protein.
Length = 467
Score = 27.5 bits (58), Expect = 8.4
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 388 WSNVQHLSR*RDNYKLHFYDIYYIVQLY 471
W ++HLS+ DN+ + F D++ + +Y
Sbjct: 314 WRKIEHLSKFIDNHSIVFNDVHLGLAIY 341
>AF304127-1|AAG50240.1| 419|Caenorhabditis elegans innexin protein.
Length = 419
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Frame = -3
Query: 307 LDYFELRFINSIKSCLLKQVLIEHFFQV---FW 218
++YF L+ + I +C+L+ VL++HF V FW
Sbjct: 184 INYFLLK-LGFIVNCILQMVLLKHFLDVDDYFW 215
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,962,494
Number of Sequences: 27780
Number of extensions: 289685
Number of successful extensions: 779
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -