Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18l22
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0928 - 7159857-7159922,7159923-7160024,7160126-7160206,716...    38   0.008
11_06_0707 + 26467214-26470309                                         33   0.14 
11_06_0698 + 26385989-26389090                                         32   0.31 
11_06_0696 + 26358713-26359779,26359826-26360110,26360177-263603...    32   0.31 
06_03_1193 - 28298656-28298754,28299303-28299377,28299456-282995...    32   0.42 
07_01_0622 - 4625246-4627759                                           30   1.3  
04_03_0911 + 20767041-20767047,20767119-20769322                       29   3.9  

>06_01_0928 -
           7159857-7159922,7159923-7160024,7160126-7160206,
           7160289-7160384,7160462-7160566,7160648-7160722,
           7161372-7161431,7161960-7162090,7162175-7162250,
           7163390-7163459,7163603-7163664,7163788-7163871,
           7163973-7164047,7164448-7164585,7164733-7164791,
           7164910-7165123,7167996-7168091,7168701-7169639
          Length = 842

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
 Frame = +1

Query: 457 LNIMNNELTDKSVLHLSKYAQFIK-LKYLRLNGNDIGTKGGEYFADFLENNTSL 615
           L+I NN +T +  LH++++ +  K L +L L  NDI  +G E  AD L+ N ++
Sbjct: 610 LDIGNNNITSEGSLHVAEFIKRTKSLLWLSLYMNDISDEGAEKVADALKQNKTI 663


>11_06_0707 + 26467214-26470309
          Length = 1031

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 18/40 (45%), Positives = 20/40 (50%)
 Frame = +1

Query: 487 KSVLHLSKYAQFIKLKYLRLNGNDIGTKGGEYFADFLENN 606
           KS +HL    Q   LKYLR+NG    TK G  F    E N
Sbjct: 793 KSCVHLPPIGQLPNLKYLRINGASAITKIGPEFVGCWEGN 832


>11_06_0698 + 26385989-26389090
          Length = 1033

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +1

Query: 487 KSVLHLSKYAQFIKLKYLRLNGNDIGTKGGEYFADFLENN 606
           KS +HL    Q   LKYL++NG    TK G  F    E N
Sbjct: 793 KSCVHLPPIGQLPNLKYLKINGASAITKIGPEFVGCWEGN 832


>11_06_0696 +
           26358713-26359779,26359826-26360110,26360177-26360356,
           26360516-26360585,26361051-26361950
          Length = 833

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +1

Query: 487 KSVLHLSKYAQFIKLKYLRLNGNDIGTKGGEYFADFLENN 606
           KS +HL    Q   LKYL++NG    TK G  F    E N
Sbjct: 594 KSCVHLPPIGQLPNLKYLKINGASAITKIGPEFVGCWEGN 633


>06_03_1193 -
           28298656-28298754,28299303-28299377,28299456-28299544,
           28299679-28299760,28300385-28300474,28300557-28300655,
           28300733-28300852,28300968-28301084,28301174-28301309,
           28301415-28301584,28301744-28301947,28302032-28302157,
           28302841-28303101,28303215-28303229
          Length = 560

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +1

Query: 148 NILKKITGTPAPLDKREINEIRLNLFTERNSDGTGSLVLRG 270
           N++ ++ GT    ++R++   R N+F+   S  T ++VLRG
Sbjct: 339 NVIDEVLGTCEVFEERQVGNERFNIFSGCPSGQTATIVLRG 379


>07_01_0622 - 4625246-4627759
          Length = 837

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 310 SL*SFCCIFEKCHSLSIPNCPCRQSFSP 227
           SL   C  F  C+  S+P C C +SFSP
Sbjct: 329 SLHDVCGPFTVCNGNSVPFCGCMESFSP 356


>04_03_0911 + 20767041-20767047,20767119-20769322
          Length = 736

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 301 SFCCIFEKCHSLSIPNCPCRQSFS 230
           +FC  F  C+ ++ P+C C + FS
Sbjct: 241 AFCGPFTVCNDITFPSCTCMKGFS 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,164,882
Number of Sequences: 37544
Number of extensions: 260960
Number of successful extensions: 572
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)