Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18l21
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    29   0.32 
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe...    27   0.98 
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   4.0  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   4.0  
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    25   4.0  
SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces ...    25   5.2  
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    25   6.9  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    25   6.9  

>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 29.1 bits (62), Expect = 0.32
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = +1

Query: 103 KDSKIXDEVKASEEKARKLFEGVPDINNIDIXKLKEVINKMAAEQKKNVEELTTMLEKQP 282
           KD K   E K S+E + K  E  P    ++  K KE  NK   + KK+ ++      K+P
Sbjct: 215 KDKKEKKEGKPSQEASVKSVEKAP--KGLEGAK-KEKQNKKEKKDKKDKKDKKEKAPKEP 271

Query: 283 PK 288
           PK
Sbjct: 272 PK 273


>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 295

 Score = 27.5 bits (58), Expect = 0.98
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +1

Query: 193 IXKLKEVINKMAAEQKKNVEELTTMLEKQ 279
           +  LKE+  K+  +Q+KN E++ T+ +K+
Sbjct: 239 LLSLKEIHAKVTQQQRKNTEDVLTLRDKK 267


>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +1

Query: 103 KDSKIXDEVKASEEKARKLFEGVPDINNIDIXKLKEVINKMAAEQKKNVE-ELTTMLEKQ 279
           KDS   + V   ++   K+F+    +  +   K ++++ K  AE++   + E T  LE++
Sbjct: 84  KDSSKKEPVVVPKKGTPKIFQENHKVKKVKSPKKEKLVGKNPAEKEDTTDVEDTQKLEQK 143

Query: 280 PPKVLDALQAGASAFKAAL 336
                 +L+  +S   AA+
Sbjct: 144 HSTTPSSLKMKSSISLAAI 162


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +1

Query: 70  KNSVDNI---IKWMKDSKIXDEVKASEEKARKLFEGVPDINNI 189
           K  V+NI   +  + D K+   +KA  EKARK+   V D +N+
Sbjct: 88  KPKVENIRYEVNEVIDKKVAPCIKAFNEKARKIGSKVLDGDNL 130


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 208 EVINKM-AAEQKKNVEELTTMLEKQPPKVLDALQAGASAFKAALEKK 345
           +VI+K+ AA  K+N E +   +E +    LDA +AG   F   L KK
Sbjct: 462 DVISKLYAAHHKENGESIGVDVECENDGTLDAKEAG--IFDVLLAKK 506


>SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 246

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
 Frame = +1

Query: 34  MDQFFEKLQKDGKNSVDNIIKW---MKDSKIXDEVK-ASEEKARKLFEGVPDINNIDIXK 201
           +++F EK+  D    + +  +W     D    +E   A +    + F+G PD+ + D+  
Sbjct: 145 VNEFNEKVGLDRVREILDCCEWNLSQVDKSFSEEKDDAGDFYLPERFKGSPDMQSTDLDN 204

Query: 202 LKEVINKMA-AEQKKNVE--ELTTMLEK 276
           L + +N++  A+ +KN +  +   +LEK
Sbjct: 205 LMKEMNQIRDADLEKNEKKAKALNLLEK 232


>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 294 QNLRRLLLEHGGQLFNVFLLFGGHFVDNLFQFXY 193
           +++ RLL  H    F V++   G FV  +F F Y
Sbjct: 78  RDVERLLGSHRFASFCVYMFILGMFVTPIFSFLY 111


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 429 HLIFFECYVKFI 394
           HL+FFE Y KF+
Sbjct: 804 HLLFFEAYTKFL 815


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,361,000
Number of Sequences: 5004
Number of extensions: 22455
Number of successful extensions: 69
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)