Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18l18
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyce...    31   0.13 
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p...    29   0.71 
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    27   1.6  
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr...    27   2.8  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    27   2.8  
SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase |Schizo...    25   6.6  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    25   8.7  
SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24 famil...    25   8.7  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    25   8.7  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    25   8.7  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    25   8.7  

>SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +1

Query: 190 FWNYNYRRSPNNATIQTVNKLHKYELNADKQTNNSD 297
           FW+++  +  + A  +T N +HK  L+++K   ++D
Sbjct: 222 FWSHHLSKLESTANTETANNIHKLLLSSEKDVGHTD 257


>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 254

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
 Frame = +2

Query: 266 LTLTNKQIIQILHKD----FDIHTGTLHSLTVDVYVNIIKKYLREWPEWDEFDQITNLQA 433
           L  T K+I   L KD      IH G +++   D++VN ++K   ++PE  E  +   +  
Sbjct: 166 LNYTMKEISFELEKDGFVVVSIHPGVVNT---DMFVNAMQKLASKYPEMVESIKSNAISP 222

Query: 434 EKSPEYVKKILE 469
           E+S   + KI++
Sbjct: 223 EQSASSMLKIVD 234


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 525  GFAISNISPKYNFIFSYLRSKIFLTY 448
            GF + N S  Y + FS+L ++++L Y
Sbjct: 966  GFVLFNFSQPYYYYFSFLLAEMYLRY 991


>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 299 LHKDFDIHTGTLHSLTVDVYVNIIKKYLREWPEWDEFD 412
           L K+ ++HTGTL     + Y    +K+L++ P WD  D
Sbjct: 288 LPKESNLHTGTLRGFMDEYY----EKHLKQ-PHWDGSD 320


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 6/22 (27%), Positives = 16/22 (72%)
 Frame = +2

Query: 386 EWPEWDEFDQITNLQAEKSPEY 451
           EW +W +F ++  ++ +++PE+
Sbjct: 56  EWAQWFDFSKVHEIEKKQNPEF 77


>SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 155 KNDVKNPEAANVSGITIIEDRPIMQLFKR 241
           +NDV  P    +SG+  +ED  I     R
Sbjct: 240 RNDVSTPAGCTISGLLALEDGKIRSTIAR 268


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 7/17 (41%), Positives = 15/17 (88%)
 Frame = +2

Query: 452 VKKILERKYENIKLYLG 502
           VK++LE++Y N+ +++G
Sbjct: 406 VKEVLEKRYANLNIFVG 422


>SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 195

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
 Frame = +2

Query: 245 INYTSMNLTLTNKQIIQILHKDFDIHTGTLHSLTVDVYVNIIKK---YLREWPEWDEFDQ 415
           ++ T +++ L    +   +H  +     T  SLT      II     +  +WPEW   ++
Sbjct: 27  VHVTILHVNLAKSMLCGFIHVSYTSPNNT--SLTTYFEAEIIGNRFTFETKWPEWGASEE 84

Query: 416 ITN 424
           I N
Sbjct: 85  IDN 87


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 12/110 (10%)
 Frame = +2

Query: 155 KNDVKNPEAANVSGITIIEDRPIMQLFKRLINYTS-MNLTLTNKQIIQILH--------K 307
           K  +K  E   V  ITI   R  +   +++  Y S   +  +N+    +L         +
Sbjct: 456 KKKIKVDERTLVICITIFSRRKDLFAMEKIHQYFSDQGIKTSNQAYAALLDAYIEAEDTE 515

Query: 308 DFDIHTGTLHSL--TVDVYVN-IIKKYLREWPEWDEFDQITNLQAEKSPE 448
             +++ G +  L  T DV +N ++ +   +  +WD  +Q T +   K PE
Sbjct: 516 KIELYLGKIRRLGITEDVSINRMLMRLALDRLDWDLLEQCTKVAERKDPE 565


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 320 HTGTLHSLTVDVYVNIIKKYLREWPEWDE 406
           H+   H+L  D+YVN++ +    WP + E
Sbjct: 484 HSKAAHNLHRDLYVNVLSQ--AYWPSYPE 510


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +2

Query: 401 DEFDQITNLQAEKSPEYVKKILERKYENIKLYLGEMLEIAKPLANEAVKEVQKVTKDSN 577
           D+F++      ++SPE +K+ +E   E  K    E  E  + LA E  K   K+ + SN
Sbjct: 28  DQFEETEEEIKKRSPEELKQAIEALREKAK----EKKEKERILALEEKKTNYKILQKSN 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,277,793
Number of Sequences: 5004
Number of extensions: 44160
Number of successful extensions: 121
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)