Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18l18
(614 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0290 + 3843610-3843712,3844088-3846003 30 1.3
02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,329... 29 2.2
02_05_0131 + 26098459-26098668,26098788-26098863,26101972-261021... 29 2.9
01_01_0320 - 2578911-2579144,2579243-2579455,2579580-2579858,257... 29 3.9
10_01_0141 - 1686827-1687063,1687160-1687315,1688046-1688974,168... 28 6.8
08_02_1426 + 27009720-27010787,27011846-27012517,27012999-270137... 27 8.9
08_01_0047 - 328895-329404,329492-329821,330253-330626,330712-33... 27 8.9
>04_01_0290 + 3843610-3843712,3844088-3846003
Length = 672
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +2
Query: 440 SPEYVKKILERKYENIKLYLGEMLEIAKPLANEAV-KEVQKVTKDSNKMNEVMMEV 604
S + + ILE + N+K+ LG ++E AK +A +A E K+TK+ + M E+
Sbjct: 407 SAQQKQSILEVEANNLKMELGALVE-AKEVATKAFDAEKAKITKELEDVKRKMEEI 461
>02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,
3299528-3299531,3299814-3299949,3300034-3300090,
3301689-3301786,3301876-3301947,3302056-3302228,
3302552-3302698,3303113-3303336,3305300-3305306,
3305634-3305800,3306033-3306068,3306787-3307004,
3307115-3307172,3307761-3307842,3308045-3308207,
3308594-3308598,3308700-3308885,3308969-3309548,
3309642-3309774,3309880-3309948,3310184-3310395,
3310654-3310891,3311228-3311386,3311501-3311926,
3312010-3312447,3312593-3312712,3312784-3313266,
3313471-3314009,3314178-3314667,3314836-3314904,
3315735-3315839,3315940-3316158,3316254-3316508,
3316602-3316651,3317175-3317284,3317372-3317454,
3317560-3317772,3317870-3318040
Length = 2391
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +2
Query: 134 NMAECSSKNDVKNPEAANVSGITIIEDRPIMQLFKRLINYTS 259
N+ + + + P+AA ++ I +IED+ ++ + KR N+ S
Sbjct: 1496 NLCTLTCTDASETPQAAVINSIQVIEDQNLLSIGKRFSNHKS 1537
>02_05_0131 +
26098459-26098668,26098788-26098863,26101972-26102178,
26102311-26102435,26102740-26102900,26102977-26103067,
26103161-26103310,26103396-26103632
Length = 418
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +2
Query: 266 LTLTNKQIIQILHKDFDIHTGTLHSLTVDVYVNIIKKYLREWPEWDEFDQITNLQAE 436
LT ++I +LH D H G + + V IK L+ +W +++++L E
Sbjct: 44 LTDKEEEIFAVLHDDLGKHRGESFRDELGILVKSIKYTLQNLKKWAASERVSSLALE 100
>01_01_0320 -
2578911-2579144,2579243-2579455,2579580-2579858,
2579961-2580050,2580258-2580439,2581366-2582470
Length = 700
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/80 (25%), Positives = 41/80 (51%)
Frame = +2
Query: 362 NIIKKYLREWPEWDEFDQITNLQAEKSPEYVKKILERKYENIKLYLGEMLEIAKPLANEA 541
N++ +YLR+ D+++ ++EKS + V IL + E +L + LE K N
Sbjct: 294 NVVGRYLRKHTNLTTIDEVSKSESEKSGKMV-AILATQIEAKNRFLQD-LETKK---NAT 348
Query: 542 VKEVQKVTKDSNKMNEVMME 601
+ ++ +D+ K+++ E
Sbjct: 349 ELSIARLEEDNRKLHDAYNE 368
>10_01_0141 -
1686827-1687063,1687160-1687315,1688046-1688974,
1689595-1689640,1689914-1689932,1690751-1690962,
1691063-1691218,1692240-1693184,1693448-1693597
Length = 949
Score = 27.9 bits (59), Expect = 6.8
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Frame = +2
Query: 248 NYTSMNLTLTNKQIIQILHKDFDIHTGTLHSLTVDVYVNIIKKYLREWPEWDEFD-QITN 424
NY LT N +Q + D+ TL +D + +L+ P ++ +
Sbjct: 360 NYEGTELTFENN--LQWCPEFIDVVNLTLGQWCLDANFYALIVFLQNSPRLEKLTLNLAK 417
Query: 425 LQAEKSPEYVKKILERKY--ENIKLYLGEMLE 514
A+KSP V +++ER + E++K+ + LE
Sbjct: 418 CIADKSPRIVGELMERSFTCEHLKIVEVKCLE 449
>08_02_1426 + 27009720-27010787,27011846-27012517,27012999-27013793,
27014914-27014943,27018095-27019987
Length = 1485
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 380 LREWPEWDEFDQITNLQAEKSPEYVKKILERKYENIKLYL 499
+REW ++ + T L S E +KKIL YE + +L
Sbjct: 911 IREWRKFSDHIS-TELDENPSLEMIKKILISSYEGLSYHL 949
>08_01_0047 -
328895-329404,329492-329821,330253-330626,330712-330937,
331026-331475
Length = 629
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +2
Query: 398 WDEFDQITNLQAEKSPEYVK--KILERKYENIKLYLGEMLEI 517
WDE + + L AE EY+K K + L+ GEML I
Sbjct: 441 WDEVNFVITLDAEHYNEYIKDHKTDAEFFNKPLLHYGEMLTI 482
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,718,891
Number of Sequences: 37544
Number of extensions: 215780
Number of successful extensions: 486
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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