Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18l16
(625 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0076 - 12241408-12241545,12241719-12241790,12242173-122422... 31 0.74
06_03_1180 + 28218386-28218649,28218725-28219202,28219309-282196... 30 1.7
07_01_0714 - 5451246-5451408,5453401-5453534,5453608-5453796,545... 29 2.3
01_06_0985 - 33594588-33595451,33597655-33598518 29 2.3
12_02_0035 - 12563503-12564405,12564494-12565611,12565709-125662... 29 3.0
07_03_1474 - 26766078-26766536,26766634-26766885,26767201-267674... 29 3.0
07_01_0805 + 6295448-6296264,6296362-6297479,6297565-6298467 29 3.0
01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055 29 3.0
01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713 29 3.0
02_05_0740 - 31404004-31404180,31404365-31405261,31405351-314059... 28 5.2
12_01_0377 - 2939384-2939505,2939629-2939695,2940324-2940543,294... 27 9.2
08_02_1120 + 24440589-24440619,24441217-24441268,24442551-244427... 27 9.2
01_01_0489 + 3608720-3608811,3609326-3609431,3609518-3609581,360... 27 9.2
>01_03_0076 -
12241408-12241545,12241719-12241790,12242173-12242289,
12243307-12245127,12245361-12245810
Length = 865
Score = 31.1 bits (67), Expect = 0.74
Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = +2
Query: 365 MNAGVFAFFF--ILVGSGQWQLMSCHRVHSSD 454
+N G + + +L+GSGQWQ + C +++ S+
Sbjct: 190 LNCGAYVNLYCDVLIGSGQWQCVICKKMNGSE 221
>06_03_1180 +
28218386-28218649,28218725-28219202,28219309-28219697,
28219785-28220426,28220466-28221368
Length = 891
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 572 CNHSTSDYIRSCGGMTKANEVFHFHC 495
C+ + +RSCGG +A + +FHC
Sbjct: 82 CSTFLVEMVRSCGGTLQAEDFAYFHC 107
>07_01_0714 -
5451246-5451408,5453401-5453534,5453608-5453796,
5454313-5454825,5455815-5456856,5457283-5457380,
5458224-5458451
Length = 788
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 404 GSGQWQLMSCHRVHSSDYFDPSAYIED-WTLDNENETLHLPSSYL 535
G G QL ++ +D FDP AY++ NE E HL SYL
Sbjct: 42 GDGGVQLADKLKIFKTDNFDPDAYVQSKCQTMNEKEIRHL-CSYL 85
>01_06_0985 - 33594588-33595451,33597655-33598518
Length = 575
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +3
Query: 513 FICLRHTSTASDIITRGMVTVAMKMAQNCVI 605
F+CLRH +T +++ RG+ T M++A N ++
Sbjct: 512 FVCLRHHNTQNNVTRRGVQT-TMRVALNDIL 541
>12_02_0035 -
12563503-12564405,12564494-12565611,12565709-12566239,
12566337-12567153
Length = 1122
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 548 IRSCGGMTKANEVFHFHC 495
IRSCGG +A + +FHC
Sbjct: 115 IRSCGGTPRAEDFAYFHC 132
>07_03_1474 -
26766078-26766536,26766634-26766885,26767201-26767401,
26767986-26768156,26768249-26768433,26768526-26768851,
26769430-26770631
Length = 931
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 440 VHSSDYFDPSAYIEDWTLDNENETLH 517
VH+S+Y DP+++ E W NE E H
Sbjct: 732 VHASNYADPNSHPEFWNKWNEFEIQH 757
>07_01_0805 + 6295448-6296264,6296362-6297479,6297565-6298467
Length = 945
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 548 IRSCGGMTKANEVFHFHC 495
IRSCGG +A + +FHC
Sbjct: 115 IRSCGGTPRAEDFAYFHC 132
>01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055
Length = 963
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 548 IRSCGGMTKANEVFHFHC 495
IRSCGG +A + +FHC
Sbjct: 115 IRSCGGTPRAEDFAYFHC 132
>01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713
Length = 946
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 548 IRSCGGMTKANEVFHFHC 495
IRSCGG +A + +FHC
Sbjct: 115 IRSCGGTPRAEDFAYFHC 132
>02_05_0740 -
31404004-31404180,31404365-31405261,31405351-31405978,
31405997-31406468,31406575-31407052
Length = 883
Score = 28.3 bits (60), Expect = 5.2
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 548 IRSCGGMTKANEVFHFHC 495
+RSCGG +A + +FHC
Sbjct: 2 VRSCGGTLQAEDFAYFHC 19
>12_01_0377 -
2939384-2939505,2939629-2939695,2940324-2940543,
2940655-2940731,2940813-2940878,2940970-2941018,
2941131-2941181,2941262-2941314,2941432-2941486,
2941563-2941651,2941742-2941827,2941933-2941989,
2942086-2942275,2943847-2944005
Length = 446
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 494 LMSNLRCRRLDRSNPTSVLDDMTLIAID 411
L +N+R + +D S P V DDM+++ D
Sbjct: 187 LKNNIRWKGIDDSRPGEVSDDMSILQAD 214
>08_02_1120 +
24440589-24440619,24441217-24441268,24442551-24442731,
24442829-24443048,24443489-24443640,24443724-24443762,
24446699-24446705,24447081-24447099,24447100-24447399,
24448125-24448164,24448417-24448633,24448915-24449060,
24449131-24449169,24449707-24449805
Length = 513
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 28 DVKYYKPICSNHVNLYN 78
DV +Y+PIC NH+ Y+
Sbjct: 355 DVLHYQPICENHIWYYH 371
>01_01_0489 +
3608720-3608811,3609326-3609431,3609518-3609581,
3609905-3609965,3610017-3610144,3610236-3610385,
3610537-3610791,3611060-3611265,3611469-3611696,
3612161-3612259
Length = 462
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 446 SSDYFDPSAYIEDWTLDNENETLHLPSSY 532
+ D+ +PS+ +E DN+NET PS +
Sbjct: 80 NQDFLEPSSGLEQDIPDNQNETQRPPSEW 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,682,230
Number of Sequences: 37544
Number of extensions: 273688
Number of successful extensions: 599
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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