Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18l16
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    25   0.60 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.60 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.60 
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   3.2  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   3.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.2  

>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 10/30 (33%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = +2

Query: 524 SSYLHSFGYNHSWNGYSS--NEDGAKLRYY 607
           +S  +++ YN+++N Y++  N +  KL+YY
Sbjct: 86  NSLSNNYNYNNNYNNYNNNYNTNYKKLQYY 115



 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 140 SLSFKYNFRLNYVEFRLDTN*LYK 69
           SLS  YN+  NY  +  + N  YK
Sbjct: 87  SLSNNYNYNNNYNNYNNNYNTNYK 110


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 443 HSSDYFDPSAYIEDWTLDNENETLHLPSSYLHS 541
           H  DY     YI++  L+N+N   H+  +Y+ S
Sbjct: 768 HEYDYELSRGYIDEKILENQNIITHMILNYVGS 800



 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 494  DNENETLHLP 523
            DN NE LH+P
Sbjct: 1480 DNHNEKLHIP 1489


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 286  TNRTSLLPPIKHNTTLAKRQSVKRLQNE 369
            TN T++LPP+K  +    +QS ++ Q +
Sbjct: 961  TNLTTILPPVKVQSQQQSQQSQQQQQQQ 988


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 536 HSFGYNHSWNGYSSNEDGAKLRY 604
           +++ YN++ N Y++N    KL Y
Sbjct: 92  NNYKYNYNNNNYNNNNYNKKLYY 114


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 536 HSFGYNHSWNGYSSNEDGAKLRY 604
           +++ YN++ N Y++N    KL Y
Sbjct: 92  NNYKYNYNNNNYNNNNYNKKLYY 114


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 46  VCNILHHFHFFDSTY 2
           +CN LHH+H     Y
Sbjct: 466 LCNTLHHWHHCPEIY 480


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,063
Number of Sequences: 438
Number of extensions: 3305
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)