Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18l13
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    78   1e-15
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    27   1.9  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   5.8  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    25   5.8  

>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 77.8 bits (183), Expect = 1e-15
 Identities = 43/102 (42%), Positives = 59/102 (57%), Gaps = 4/102 (3%)
 Frame = +3

Query: 264 LSGLDHLKHPGLNKGMAFTIEERQLLGIHGLLPPRVKTQEEQVELCKLSIDRY----ENP 431
           L G+  L  P  NK  AFT EERQ   I   LPP V+T ++QV+ C    D+Y    + P
Sbjct: 13  LKGVTLLNSPRYNKDTAFTPEERQKFEISSRLPPIVETLQQQVDRC---YDQYKAIGDEP 69

Query: 432 LNKYIYLMGLLDRNEHLFYRFVADNVAEMMPIVYTPTVGPGL 557
           L K +YL  L   N+ LFY  ++ ++ EM+PI+YTPT G  +
Sbjct: 70  LQKNLYLSQLSVTNQTLFYALISQHLIEMIPIIYTPTEGDAI 111


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 310 WLLPSKSVSSWGSTGCYHHES 372
           W+LP K   S+GS    HH+S
Sbjct: 429 WMLPDKRSHSYGSPKSLHHKS 449


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +1

Query: 430 HLTSTSILWGSWTAMSICS--TVSSRITW 510
           HL  TS++ G+W  +   S   VS  +TW
Sbjct: 71  HLNHTSVMTGNWNILPYPSFGKVSPNVTW 99


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
            polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 164  LDCRERNASFVTVSGGRWTH 105
            L C E+N +F  V    WTH
Sbjct: 1013 LKCSEQNINFAAVHDSYWTH 1032


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,180
Number of Sequences: 5004
Number of extensions: 49366
Number of successful extensions: 149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)