Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18l13
         (560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.2  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   1.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.1  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    22   3.7  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   4.9  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   6.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   6.4  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   8.5  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
 Frame = -2

Query: 262 PLVGCPSPEPHNPIR-----SRSISLYVH 191
           PL+   +PE H+PIR     SRS+ L  H
Sbjct: 71  PLLRFENPETHHPIRHGRRQSRSMDLNAH 99


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 536 SVHNWHHFSHVIRDETVEQMLIA 468
           SVH+ HH   V RD   E +L+A
Sbjct: 21  SVHHCHHNGVVHRDLKPENLLLA 43


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 126 HCNKTGVPFSAVKQSQATSGGKCTYSEMERDR 221
           HC   GVP   +   +AT      Y E+ R+R
Sbjct: 730 HCQAQGVPTPTIVWKKATGSKSGEYEEL-RER 760


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 126 HCNKTGVPFSAVKQSQATSGGKCTYSEMERDR 221
           HC   GVP   +   +AT      Y E+ R+R
Sbjct: 726 HCQAQGVPTPTIVWKKATGSKSGEYEEL-RER 756


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 305 GYGFYHRRASALGDPR 352
           G+G Y R+A A+ DPR
Sbjct: 28  GFGPYIRQAVAMRDPR 43


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -2

Query: 559 DRPGPTVGVYTIGIIS 512
           +RP P   +Y++GI++
Sbjct: 229 NRPTPAADIYSLGIVA 244


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 323 RRASALGDPRVVTTTSQDARGAG*TMQALDRQI 421
           +R +   DP VV TTS   RG   T+  LD+++
Sbjct: 29  QRGNVHNDPLVVETTSGLVRGFPRTV--LDKEV 59


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -2

Query: 295 PGCLRWSRPERPLV 254
           P   +W  P RP+V
Sbjct: 837 PNLTKWGNPNRPIV 850


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 323 RRASALGDPRVVTTTSQDARGAG*TMQALDRQI 421
           +R +   DP VV TTS   RG   T+  LD+++
Sbjct: 29  QRGNVHNDPLVVETTSGLVRGFPRTV--LDKEV 59


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 390 VELCKLSIDRYENPLNKYIY 449
           + LC +SIDRY       IY
Sbjct: 127 LSLCAISIDRYLAVTQPLIY 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,320
Number of Sequences: 438
Number of extensions: 4281
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)