Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18l12
         (310 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    23   0.64 
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    23   1.1  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   1.9  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   2.6  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   2.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    20   5.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   5.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   5.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   5.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   5.9  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   5.9  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    20   7.8  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    20   7.8  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    20   7.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    20   7.8  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 23.4 bits (48), Expect = 0.64
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +2

Query: 71  YCPPVCSPPDCRPICGPASPLLCQSSVPPTQR--CYPVNPCI 190
           +CP V   P C  IC P    +C+      ++  C P + C+
Sbjct: 53  FCPNVVPKPLCIKICAPG--CVCRLGYLRNKKKVCVPRSKCL 92


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +2

Query: 71  YCPPVCSPPDCRPICGP 121
           +CP V   P C  IC P
Sbjct: 53  FCPNVVPKPLCIKICAP 69


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +2

Query: 71  YCPPVCSPPDCRPICGPASPLL 136
           +C P C P    P     SPLL
Sbjct: 43  FCLPFCGPNVINPFFCDMSPLL 64


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 183 LASTYTAVTLKLCNAMDDFYSEFKN 257
           LAST T   +K+   + DF+  F N
Sbjct: 477 LASTTTTNDIKMQKVLIDFWVSFVN 501


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 183 LASTYTAVTLKLCNAMDDFYSEFKN 257
           LAST T   +K+   + DF+  F N
Sbjct: 477 LASTTTTNDIKMQKVLIDFWVSFVN 501


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 256 FLNSL*KSSIALH 218
           FLN L KSS+ +H
Sbjct: 425 FLNQLKKSSVLVH 437


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 266 THTCFVKCTVNLKKK 310
           THT    CT  L+KK
Sbjct: 436 THTTTNGCTAELRKK 450


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 266 THTCFVKCTVNLKKK 310
           THT    CT  L+KK
Sbjct: 422 THTTTNGCTAELRKK 436


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 266 THTCFVKCTVNLKKK 310
           THT    CT  L+KK
Sbjct: 456 THTTTNGCTAELRKK 470


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 266 THTCFVKCTVNLKKK 310
           THT    CT  L+KK
Sbjct: 405 THTTTNGCTAELRKK 419


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 10/39 (25%), Positives = 16/39 (41%)
 Frame = -3

Query: 212 ECNSCICXCKDLQDSTVVLVARCSGKGAEMQVHRSDDNP 96
           EC    C    ++   VV   +C+ K  E +  +  D P
Sbjct: 241 ECRLKKCLTVGMRPECVVPEYQCAVKRKEEKAQKEKDKP 279


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
 Frame = +2

Query: 71  YCPPVCSPPDCRP-IC--GPASPLLC 139
           +C P C P    P  C   P+  LLC
Sbjct: 44  FCLPFCGPNVINPFFCDMSPSLSLLC 69


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -3

Query: 308 FFLSLLYILQNKCVFLTIFKFTIEIVH 228
           + + +  I Q K   L I+K+  +I+H
Sbjct: 76  YIIRMFLISQQKTSKLKIYKWNNQILH 102


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -3

Query: 308 FFLSLLYILQNKCVFLTIFKFTIEIVH 228
           + + +  I Q K   L I+K+  +I+H
Sbjct: 59  YIIRMFLISQQKTSKLKIYKWNNQILH 85


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -1

Query: 286 FYKTSVCF*PFLNSL*KSSIALHNLSVTAVYV 191
           +Y  S+C   F ++L   ++ LH+  V    V
Sbjct: 278 YYGVSICLVTFASALAVVTLNLHHRGVRGTRV 309


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,360
Number of Sequences: 438
Number of extensions: 1776
Number of successful extensions: 16
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)