Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18l07
         (607 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0102 - 25589011-25589181,25589269-25589496,25589589-255899...    33   0.23 
05_04_0319 + 20171486-20171800,20171882-20171956,20172160-201721...    29   3.8  

>05_06_0102 -
           25589011-25589181,25589269-25589496,25589589-25589933,
           25590406-25590777,25590957-25591049,25591150-25591401,
           25592019-25593224
          Length = 888

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 449 GLYQTPLFV-LAILSYVQNKSDLGLFSYQGKWSMDGCQK 336
           GLYQ P FV L +LS  + K    +F+  G W + GC K
Sbjct: 317 GLYQMPDFVCLHLLSISREKITTAIFNSLGNWLVFGCAK 355


>05_04_0319 +
           20171486-20171800,20171882-20171956,20172160-20172195,
           20172302-20172413,20173082-20173152,20173287-20173417,
           20173718-20173783,20174003-20174103,20174311-20174370,
           20174463-20174496,20174852-20174950,20175019-20175078,
           20175700-20175874,20175900-20175950,20176603-20176632
          Length = 471

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +2

Query: 164 IDFSDLDTCQICHSILSDHSELYLYV*VHLDVNEI 268
           +D S   T Q+ + ILSD S+++ +  VHL  +E+
Sbjct: 286 LDVSSESTFQVINGILSDFSKVFKFKFVHLGGDEV 320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,622,896
Number of Sequences: 37544
Number of extensions: 193345
Number of successful extensions: 358
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)