Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18l07
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74028-2|CAA98428.1| 1058|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z47073-2|CAA87373.1|  507|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AC006742-5|AAF60496.1|  239|Caenorhabditis elegans Hypothetical ...    27   7.9  
AC006742-4|AAF60495.1|  239|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z74028-2|CAA98428.1| 1058|Caenorhabditis elegans Hypothetical protein
            C14C10.4 protein.
          Length = 1058

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -3

Query: 215  PTISNDIFDMCPNLKSQL-LVELVELAVRKVNNCKQTHYSHEISN-IRK*SFVLRKKFR 45
            P +  D+F +     S L L  L+ELA RK+ N        E+SN I   SF L+ K R
Sbjct: 981  PRLLKDMFIVFNGRASTLDLNNLLELATRKLWNINDIESLQELSNEIETTSFPLQNKLR 1039


>Z47073-2|CAA87373.1|  507|Caenorhabditis elegans Hypothetical
           protein ZC506.3 protein.
          Length = 507

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +3

Query: 123 IYLSNG*FH*LYQQLTFQIWTHV---KYVIRYCRTIVSYIFMCKYIWMLTKYGVFFNK 287
           I  + G F  +  Q T + W       + +   RT+  Y+F+   IW+LT+   FF K
Sbjct: 305 IKTNRGRFKRMVMQFTPESWNDFDWGSFTVTIKRTMSVYVFVL--IWLLTELNTFFMK 360


>AC006742-5|AAF60496.1|  239|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.7 protein.
          Length = 239

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = -3

Query: 401 QNKSDLGLFSYQGKWSMDGCQKNLTRKP*FQSNLELRFFIKENTIFR*HPNVLTHK-DIT 225
           +N+S++  F  +   S +G ++N+  K      L +R  I++ T  +   N  + K    
Sbjct: 124 RNRSEMKQFKMEMMSSFNGLKQNMDTKMEEMMQL-MRALIQDLTSQKLAQNPESSKCSFP 182

Query: 224 HYGPTISNDIFDMCPNLKSQ 165
           +YG  I     DM  N+KSQ
Sbjct: 183 NYGLEIQKKFEDMIQNMKSQ 202


>AC006742-4|AAF60495.1|  239|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.3 protein.
          Length = 239

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = -3

Query: 401 QNKSDLGLFSYQGKWSMDGCQKNLTRKP*FQSNLELRFFIKENTIFR*HPNVLTHK-DIT 225
           +N+S++  F  +   S +G ++N+  K      L +R  I++ T  +   N  + K    
Sbjct: 124 RNRSEMKQFKMEMMSSFNGLKQNMDTKMEEMMQL-MRALIQDLTSQKLAQNPESSKCSFP 182

Query: 224 HYGPTISNDIFDMCPNLKSQ 165
           +YG  I     DM  N+KSQ
Sbjct: 183 NYGLEIQKKFEDMIQNMKSQ 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,322,333
Number of Sequences: 27780
Number of extensions: 205706
Number of successful extensions: 455
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)