Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18l02
         (307 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.09c |cox13||cytochrome c oxidase subunit VIa|Schizosacc...    42   3e-05
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    25   2.5  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    24   4.4  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    24   4.4  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    24   4.4  
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom...    24   4.4  
SPCC584.12 |mug42||sequence orphan|Schizosaccharomyces pombe|chr...    24   5.8  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    23   7.7  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    23   7.7  

>SPCC1739.09c |cox13||cytochrome c oxidase subunit
           VIa|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 130

 Score = 41.5 bits (93), Expect = 3e-05
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +3

Query: 84  YEYMRVRTKRFPWGDGVKSFYHNEHVNHLPGECE 185
           Y +  +R K++PWGDG K+ + N+ VNHL  + E
Sbjct: 97  YSFENLRFKKYPWGDGSKTLFWNDKVNHLKKDDE 130


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 144 YHNEHVNHLPGECEAPPLD 200
           YH+E+VN++P   +AP  D
Sbjct: 236 YHHENVNYVPTIADAPLTD 254


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 144 YHNEHVNHLPGECEAPPLD 200
           YH+ H   +PGE  + PLD
Sbjct: 9   YHHHHHTSVPGERLSDPLD 27


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 254 VYHLKCLL*KKWFVTLITVEWRSF 183
           V++ KCLL K W   +  + W  F
Sbjct: 14  VFYYKCLLNKNWNEPINNIFWGEF 37


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 132 LRLPKEIVLFGLAYIHNRGM 73
           +R     VL+GL+Y+H++G+
Sbjct: 932 VRFVSRQVLYGLSYLHSKGI 951


>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
 Frame = +3

Query: 45  LGHEPPPKGPC----RDYEYMRVRTKRFPWGDGVKSFYHNEHVNHL 170
           + H P P  P     R +  +    K F WG    S +  EH +H+
Sbjct: 135 MAHRPDPSVPMEEVVRAFTQLIQDGKAFYWGTSEWSAFEIEHAHHI 180


>SPCC584.12 |mug42||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 115

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +3

Query: 45  LGHEPPPKGPCRDYEYMRVRTKRFPWGDGVKSFYHNEHVNHLPGECE 185
           +G  PP + P        V+ K +  G G+K F+      +L G+ +
Sbjct: 5   IGTFPPRRRPTLHETENHVKKKNWRCGKGIKCFFKPSDQVYLVGQVD 51


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 227 FKVNISSDKQRIVQADCNKISKSIXK 304
           F  NISS  QR ++  CN +  S  K
Sbjct: 408 FSANISSVDQRFLRRLCNDLHLSFSK 433


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 111 VLFGLAYIHNRGM 73
           +L  LAYIH+RGM
Sbjct: 756 ILEALAYIHSRGM 768


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,191,515
Number of Sequences: 5004
Number of extensions: 21860
Number of successful extensions: 53
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)