Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18l02
(307 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0334 + 24156532-24156565,24156681-24156782,24157145-241572... 27 2.2
12_01_0353 - 2695457-2696028,2696147-2696264 27 3.8
09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468 26 5.1
08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813... 26 5.1
03_06_0120 + 31804301-31804412,31804525-31804631,31804714-318047... 26 5.1
02_05_0970 - 33179180-33179210,33179297-33179441,33180307-331803... 26 5.1
02_02_0207 - 7845072-7845102,7845235-7845341,7845444-7845521,784... 26 5.1
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543... 26 5.1
06_01_0601 + 4337575-4340149,4340566-4340978 25 8.9
>05_05_0334 +
24156532-24156565,24156681-24156782,24157145-24157274,
24157361-24157445,24157525-24157666,24157762-24157894,
24157993-24158254,24158331-24158519,24158596-24158721,
24158809-24159195,24159288-24159398,24159629-24160423,
24161114-24161255,24161350-24162518,24162609-24162818,
24163010-24163478,24164037-24164464
Length = 1637
Score = 27.5 bits (58), Expect = 2.2
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3
Query: 123 GDGVKSFYHNEHVN 164
GDG SF++NEHVN
Sbjct: 325 GDGFLSFFNNEHVN 338
>12_01_0353 - 2695457-2696028,2696147-2696264
Length = 229
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 3 FVLLPLIAIQSFNALGHEPPP-KGPCRDYEYMRVRTKRFPWGD 128
F+L+PLIA+ + A+ +P P + C + VR FP D
Sbjct: 7 FLLIPLIALVTTQAMASDPSPLQDLCVADKNSPVRVNGFPCKD 49
>09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468
Length = 1078
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -2
Query: 264 TIRCLSLEMFTLKKVVCHINHSRVAELHIRRANGLRAHCGKM 139
TI TL +CH+ H R EL + L + GKM
Sbjct: 582 TIHIRDARCATLIGSLCHLKHLRYLELGYTNISALPQNIGKM 623
>08_02_0200 -
14179389-14180488,14180575-14180736,14180983-14181383,
14182078-14182272,14182980-14183094,14183180-14183428,
14184032-14184093,14184335-14184435,14184701-14184815,
14185211-14185302,14187619-14187777
Length = 916
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 84 YEYMRVRTKRFPWGDGVKSFY 146
Y Y+ ++ K WGDG KS Y
Sbjct: 518 YYYVSLKGKAGDWGDGFKSAY 538
>03_06_0120 +
31804301-31804412,31804525-31804631,31804714-31804756,
31806069-31806187
Length = 126
Score = 26.2 bits (55), Expect = 5.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 84 YEYMRVRTKRFPWGDGV 134
Y Y+ +R K FPW + V
Sbjct: 75 YPYLHIRNKEFPWENAV 91
>02_05_0970 -
33179180-33179210,33179297-33179441,33180307-33180362,
33180650-33180691,33180814-33180866,33181059-33181490,
33181630-33181707,33181785-33181870,33183588-33183689,
33183754-33183960,33184976-33185336,33185463-33185626,
33185709-33185817,33186468-33186485
Length = 627
Score = 26.2 bits (55), Expect = 5.1
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Frame = +2
Query: 98 SPNKTISLGRRSQII----LPQ*ARKPFARRM*SSATR 199
SPN+T SLG Q+I PQ A+ PF + SSAT+
Sbjct: 391 SPNQTSSLGSYEQLIQQYQQPQ-AQNPFRLQQVSSATQ 427
>02_02_0207 -
7845072-7845102,7845235-7845341,7845444-7845521,
7845966-7846169,7846389-7846445,7846513-7846578,
7847976-7848020,7848129-7848170,7848563-7848649,
7848830-7848919,7849226-7849431,7849565-7849604
Length = 350
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +3
Query: 48 GHEPPPKGPCRDYEYMRVRTKRFPW---GDGVKSFYHNEHVNHLPGECEA 188
GH PCR +++R R + W GV + N V G CEA
Sbjct: 33 GHSEDHWQPCRGIQWVRERLRGRRWYGGASGVATEAVNRGVEEAKGCCEA 82
>01_02_0116 -
11252220-11253313,11253398-11253559,11253977-11254306,
11254328-11254377,11255195-11255389,11255532-11255625,
11255713-11255961,11256831-11256892,11257434-11257534,
11257766-11257880,11258384-11258475,11259197-11259333,
11259721-11259760
Length = 906
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 84 YEYMRVRTKRFPWGDGVKSFY 146
Y Y+ ++ K WGDG KS Y
Sbjct: 510 YYYVSLKGKAGDWGDGFKSAY 530
>06_01_0601 + 4337575-4340149,4340566-4340978
Length = 995
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 6 VLLPLIAIQSFNALGHEPPPKGP 74
V+LP +A S + L H PPP P
Sbjct: 726 VVLPFMANGSLDGLIHPPPPPPP 748
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,695,560
Number of Sequences: 37544
Number of extensions: 147021
Number of successful extensions: 376
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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