Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18l02
         (307 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U12966-3|AAA20614.1|  128|Caenorhabditis elegans Temporarily ass...    40   5e-04
Z78541-3|CAD44120.1|  733|Caenorhabditis elegans Hypothetical pr...    29   0.85 
Z70269-4|CAA94223.2|  733|Caenorhabditis elegans Hypothetical pr...    29   0.85 
Z70269-1|CAD44161.1|  770|Caenorhabditis elegans Hypothetical pr...    29   0.85 
Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical pr...    28   1.5  
Z32683-10|CAA83625.1|  381|Caenorhabditis elegans Hypothetical p...    26   6.0  
AF101314-4|AAM48559.1|  120|Caenorhabditis elegans Hypothetical ...    26   6.0  
AF101314-3|AAM48558.1|  120|Caenorhabditis elegans Hypothetical ...    26   6.0  
AF101314-2|AAM48557.1|  463|Caenorhabditis elegans Hypothetical ...    26   6.0  
AF101314-1|AAQ91895.1|  468|Caenorhabditis elegans Hypothetical ...    26   6.0  
AC006722-2|AAK68422.1|  296|Caenorhabditis elegans Hypothetical ...    26   6.0  
AC006645-7|AAF39840.1|  296|Caenorhabditis elegans Hypothetical ...    26   6.0  
U80031-2|AAB37612.1|  468|Caenorhabditis elegans Hypothetical pr...    25   7.9  
U70855-4|AAB09163.1|  625|Caenorhabditis elegans Hypothetical pr...    25   7.9  

>U12966-3|AAA20614.1|  128|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 174 protein.
          Length = 128

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 81  DYEYMRVRTKRFPWGDGVKSFYHNEHVNHLPG 176
           +Y ++ VR K FPW DG  S +HN+    +PG
Sbjct: 87  EYAFLNVRNKPFPWSDGNHSLFHNKAEQFVPG 118


>Z78541-3|CAD44120.1|  733|Caenorhabditis elegans Hypothetical
           protein ZK1086.1a protein.
          Length = 733

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +3

Query: 18  LIAIQSFNALGHEPPPKGPCRDYEYMRVRTKRFPWG--DGVKSFYHNEHVNHLP 173
           ++ +  F   G    PKG  + Y  +   T R  W   DG  +FY  E V+H P
Sbjct: 326 IVKVTKFFLSGFYKKPKGLKKPYNPILGETFRCKWEHPDGSTTFYMAEQVSHHP 379


>Z70269-4|CAA94223.2|  733|Caenorhabditis elegans Hypothetical
           protein ZK1086.1a protein.
          Length = 733

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +3

Query: 18  LIAIQSFNALGHEPPPKGPCRDYEYMRVRTKRFPWG--DGVKSFYHNEHVNHLP 173
           ++ +  F   G    PKG  + Y  +   T R  W   DG  +FY  E V+H P
Sbjct: 326 IVKVTKFFLSGFYKKPKGLKKPYNPILGETFRCKWEHPDGSTTFYMAEQVSHHP 379


>Z70269-1|CAD44161.1|  770|Caenorhabditis elegans Hypothetical
           protein ZK1086.1b protein.
          Length = 770

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +3

Query: 18  LIAIQSFNALGHEPPPKGPCRDYEYMRVRTKRFPWG--DGVKSFYHNEHVNHLP 173
           ++ +  F   G    PKG  + Y  +   T R  W   DG  +FY  E V+H P
Sbjct: 363 IVKVTKFFLSGFYKKPKGLKKPYNPILGETFRCKWEHPDGSTTFYMAEQVSHHP 416


>Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical
           protein F45B8.3 protein.
          Length = 241

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 168 LPGECEAPPLDCD*CDKP 221
           +P  C APP++C  CD P
Sbjct: 191 VPCRCGAPPMECPNCDMP 208


>Z32683-10|CAA83625.1|  381|Caenorhabditis elegans Hypothetical
           protein R07E5.3 protein.
          Length = 381

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 168 LPGECEAPPLDCD*CDKPLFLK*TFQVIN 254
           L    EAPPLD + CD+   LK    V N
Sbjct: 240 LEASTEAPPLDVNICDQRAVLKLNINVGN 268


>AF101314-4|AAM48559.1|  120|Caenorhabditis elegans Hypothetical
           protein Y39D8A.1c protein.
          Length = 120

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 281 YYNQPVLYAVYHLKCL 234
           YY Q V+YA Y + CL
Sbjct: 53  YYGQAVIYAFYMISCL 68


>AF101314-3|AAM48558.1|  120|Caenorhabditis elegans Hypothetical
           protein Y39D8A.1b protein.
          Length = 120

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 281 YYNQPVLYAVYHLKCL 234
           YY Q V+YA Y + CL
Sbjct: 53  YYGQAVIYAFYMISCL 68


>AF101314-2|AAM48557.1|  463|Caenorhabditis elegans Hypothetical
           protein Y39D8A.1a protein.
          Length = 463

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 281 YYNQPVLYAVYHLKCL 234
           YY Q V+YA Y + CL
Sbjct: 53  YYGQAVIYAFYMISCL 68


>AF101314-1|AAQ91895.1|  468|Caenorhabditis elegans Hypothetical
           protein Y39D8A.1d protein.
          Length = 468

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 281 YYNQPVLYAVYHLKCL 234
           YY Q V+YA Y + CL
Sbjct: 53  YYGQAVIYAFYMISCL 68


>AC006722-2|AAK68422.1|  296|Caenorhabditis elegans Hypothetical
           protein Y19D10A.9 protein.
          Length = 296

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 105 TKRFPWGDGVKSFYHNEHVNH 167
           + RF W DG   ++ N ++NH
Sbjct: 89  SSRFQWDDGTTMYWSNFNMNH 109


>AC006645-7|AAF39840.1|  296|Caenorhabditis elegans Hypothetical
           protein F56A4.2 protein.
          Length = 296

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 105 TKRFPWGDGVKSFYHNEHVNH 167
           + RF W DG   ++ N ++NH
Sbjct: 89  SSRFQWDDGTTMYWSNFNMNH 109


>U80031-2|AAB37612.1|  468|Caenorhabditis elegans Hypothetical
           protein B0554.5 protein.
          Length = 468

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 281 YYNQPVLYAVYHLKCL 234
           YY Q V+YA Y + CL
Sbjct: 53  YYGQAVIYAFYMIACL 68


>U70855-4|AAB09163.1|  625|Caenorhabditis elegans Hypothetical
           protein K08F11.5 protein.
          Length = 625

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 28  YKVLTPLATNHHQKDHAAIMNICESEQNDFLGETESNHF 144
           Y   T   T+  +K    +  IC+ + + +L +TE N F
Sbjct: 178 YDADTKQLTDRARKALIRVFKICDRDNDGYLSDTELNDF 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,740,532
Number of Sequences: 27780
Number of extensions: 129731
Number of successful extensions: 334
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)