Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18k20
         (561 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   0.91 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   1.2  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   6.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.5  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 162 TNARFLLCLI*NIQVR*RMKRLKDGDWNLLLSNTILYTDR-GKRTMPLM 305
           +NARFL+  + +   R    RL D +  L  S  ++  DR G R   L+
Sbjct: 311 SNARFLMDSMFDFAERVNSLRLSDAELGLFCSVVVIAADRPGLRNTELV 359



 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 334 FYSGTNSG*CISGIVLFPRSVYN 266
           F + TNS  C++G VL   S++N
Sbjct: 287 FDAQTNSMICLNGQVLKRESIHN 309


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 341 YVFLQWHKLGIVHQRHSSLSPVC 273
           Y  ++W  LG+  +RH    P C
Sbjct: 196 YPSVEWDILGVPAERHKKYYPCC 218


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 287 ENYAADALSRVCATVETRTAKLFSLHEALCHPGVT 391
           +++AA+  +   ATV T TA     + A+CHP ++
Sbjct: 130 QSFAAETSAN--ATVLTITAFTVERYIAICHPFIS 162


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 425 EGF*SEPSETFLLPLDDKEPHAARKVLQYV 336
           +G  SEP    +LPL   +P + R+  Q +
Sbjct: 311 DGATSEPFPFLMLPLGADDPDSLRRKRQKI 340


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +2

Query: 317 VCATVETRTAKLFSLHEALCHPG 385
           VCA+     A    LH A CH G
Sbjct: 117 VCASNGKIYANHCELHRAACHSG 139


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 19/59 (32%), Positives = 23/59 (38%)
 Frame = -1

Query: 198 CFILNIKETERWSVTNLKCLPIRKCLHFFNDSTMAYASFSMAECFFSGFNKLKLTVKFA 22
           C   N   T   S T    +P R  L    D   A  S +  EC   GF K ++T K A
Sbjct: 658 CTAENAAGTASHSTTLTVNVPPRWILEP-TDKAFAQGSDARVECKADGFPKPQVTWKKA 715


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 178 RNRALVSYQLKVSTNKEMSP 119
           RN+AL+      + NKE SP
Sbjct: 764 RNKALLPVIKPANVNKEQSP 783


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,697
Number of Sequences: 438
Number of extensions: 2856
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)