Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18k15
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    46   3e-06
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    27   1.7  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    27   2.3  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    26   3.0  
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    25   5.2  
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma...    25   6.9  
SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein Mc...    25   9.1  

>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 46.4 bits (105), Expect = 3e-06
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +2

Query: 359 VPLPPEIMEHFAHMQCHCLMGVFPEISRVWLAIDSNIYVWAFEHGSDVAYFDGL 520
           V +P  I E +   +C   MG+F EI R W+ +D+ +++W +  G +   ++ L
Sbjct: 68  VNIPDRIFEQYNRTECFTQMGLFAEIQRAWITVDNRLFLWDYLSGQNFQAYEDL 121


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 390 KCSIISGGRGTLLRIFNWDKLGW 322
           K S+I    GTLLR  NW  LG+
Sbjct: 206 KPSLIKATLGTLLRFLNWIPLGY 228


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 413 LMGVFPEISRVWLAIDSNIYVWAFEH-GSDVAYF 511
           L+ V     RVW   DSN+ +W   H G   +Y+
Sbjct: 63  LLTVIAGFVRVWKIADSNVVIWDEAHFGKFASYY 96


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 483 NAQTYILLSIASQTLLISGKTPIKQWHCI*AKCSIISGGRG 361
           +A T +L  IAS +  I G+   + W  +   CS + G  G
Sbjct: 511 SACTVLLFYIASNSAKIQGQLATEIWAVLRDTCSFLQGSSG 551


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 191 LDRYISFDNSRPSFLELTGIAAQRSPTCSGLNAGDYRNLAAL 316
           LDR+I FD  + SFL+  G       TCS L+   +R L  +
Sbjct: 249 LDRFIEFDKWQQSFLQDHGY--WNDYTCS-LHGASFRTLVGV 287


>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 396

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 227 SFLELTGIAAQRSPTCSGLNAGDYRNLAALLNHPNLSQLKILNKVP 364
           +FL+  G+ A +      L+ G Y N A +    N  +  +LNK+P
Sbjct: 349 AFLKNEGVYASQYRDGIRLSLGLYNNAADISRLANTIKKGVLNKIP 394


>SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein
           Mcp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 143 GAYKMQLESLELAGCTLDRYISFDNSR 223
           G+ + QL+ L+    TLD  ISF+ S+
Sbjct: 85  GSLQAQLDDLKQKSKTLDENISFEKSK 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,254,834
Number of Sequences: 5004
Number of extensions: 46359
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)