Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18k13
(614 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97191-7|AAB52429.1| 241|Caenorhabditis elegans Hypothetical pr... 32 0.28
AF101305-3|AAF98595.1| 341|Caenorhabditis elegans Serpentine re... 30 1.1
AL110485-18|CAB60366.1| 108|Caenorhabditis elegans Hypothetical... 30 1.5
AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical ... 29 3.5
AF045639-6|AAX22296.1| 392|Caenorhabditis elegans Serpentine re... 28 4.6
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 27 8.1
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 27 8.1
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 27 8.1
AF101310-2|AAC69215.1| 299|Caenorhabditis elegans Hypothetical ... 27 8.1
AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel... 27 8.1
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 27 8.1
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 27 8.1
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 27 8.1
>U97191-7|AAB52429.1| 241|Caenorhabditis elegans Hypothetical
protein F53F10.1 protein.
Length = 241
Score = 32.3 bits (70), Expect = 0.28
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 310 AFQMRAQWKKVDNCRALWFERWSWLLDERKQTLAEADAIR 429
A QM + +C A W RWS + DER + EA+ +R
Sbjct: 54 AAQMEKTMRWWSSCTADWRNRWSAVRDERNRAREEAETLR 93
>AF101305-3|AAF98595.1| 341|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 1 protein.
Length = 341
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 55 IIFYCYSALRNNLFKTNVNIFINYFASTISHSLALYL 165
II+YC+ + N + N+ IF+ F+ I+ LYL
Sbjct: 169 IIYYCWMSSTGNRYMLNLPIFVIVFSQLITIPALLYL 205
>AL110485-18|CAB60366.1| 108|Caenorhabditis elegans Hypothetical
protein Y46G5A.23 protein.
Length = 108
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 411 GGGRHPSRGRFDPGAGQRDGNHQGTQAG 494
GGGR RG G G R G H+G G
Sbjct: 70 GGGRRHHRGHRHGGGGHRHGGHRGGGGG 97
>AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical
protein Y87G2A.5 protein.
Length = 1050
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 388 DERKQTLAEADAIRREAASTLAQVKETETTKALKPVPVTTTG 513
+E+++ LAE A + A+ K+ +T +A +PV T TG
Sbjct: 29 EEKQKKLAEKKAAASDKPVKEAKAKKEQTVEAAEPVDQTPTG 70
>AF045639-6|AAX22296.1| 392|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 5 protein.
Length = 392
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 22 VLYIVQYFC-LAIIFYCYSALRNNLFKTNVNIFINYFASTISHSLAL 159
+L++ YF +I C++ L + ++TN +I+Y STI + A+
Sbjct: 114 LLFVAFYFAPFPVIERCFATLYMHDYETNKRRWISYLLSTILYIFAI 160
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 202 EHHPQYNLDNFLIDRLKSL*DMAKEPKASKFDPNTEAFQMRAQWKK 339
E+HP ++ FL+ R L + K+ SK+D + A+ KK
Sbjct: 808 ENHPFFDRPLFLVGRASQLREFCKKMVHSKYDSQDDGTNGGAKTKK 853
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 202 EHHPQYNLDNFLIDRLKSL*DMAKEPKASKFDPNTEAFQMRAQWKK 339
E+HP ++ FL+ R L + K+ SK+D + A+ KK
Sbjct: 842 ENHPFFDRPLFLVGRASQLREFCKKMVHSKYDSQDDGTNGGAKTKK 887
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 414 GGRHPSRGRFDPGAGQRDGNH-QGTQAGPRH 503
GGRH GR +G G H G + GP H
Sbjct: 331 GGRHGGHGRHGSRSGSPGGRHGHGGRHGPPH 361
>AF101310-2|AAC69215.1| 299|Caenorhabditis elegans Hypothetical
protein C39F7.1 protein.
Length = 299
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -2
Query: 433 RDGWRPPPLTFVSFRPITSSIFQTKGPDNCQPFST 329
R+ W P P RP TS + + G DN ST
Sbjct: 103 RNSWNPTPFDHYPSRPATSILTTSAGNDNSIYVST 137
>AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
b protein.
Length = 978
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 202 EHHPQYNLDNFLIDRLKSL*DMAKEPKASKFDPNTEAFQMRAQWKK 339
E+HP ++ FL+ R L + K+ SK+D + A+ KK
Sbjct: 866 ENHPFFDRPLFLVGRASQLREFCKKMVHSKYDSQDDGTNGGAKTKK 911
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 202 EHHPQYNLDNFLIDRLKSL*DMAKEPKASKFDPNTEAFQMRAQWKK 339
E+HP ++ FL+ R L + K+ SK+D + A+ KK
Sbjct: 900 ENHPFFDRPLFLVGRASQLREFCKKMVHSKYDSQDDGTNGGAKTKK 945
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 202 EHHPQYNLDNFLIDRLKSL*DMAKEPKASKFDPNTEAFQMRAQWKK 339
E+HP ++ FL+ R L + K+ SK+D + A+ KK
Sbjct: 953 ENHPFFDRPLFLVGRASQLREFCKKMVHSKYDSQDDGTNGGAKTKK 998
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 202 EHHPQYNLDNFLIDRLKSL*DMAKEPKASKFDPNTEAFQMRAQWKK 339
E+HP ++ FL+ R L + K+ SK+D + A+ KK
Sbjct: 872 ENHPFFDRPLFLVGRASQLREFCKKMVHSKYDSQDDGTNGGAKTKK 917
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,985,212
Number of Sequences: 27780
Number of extensions: 326527
Number of successful extensions: 1082
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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