Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18k09
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...   100   2e-22
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...    69   4e-13
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   2.3  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   3.0  
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    26   3.0  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   4.0  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    26   4.0  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    25   5.3  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    25   5.3  
SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.2  

>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score =  100 bits (239), Expect = 2e-22
 Identities = 55/165 (33%), Positives = 91/165 (55%), Gaps = 15/165 (9%)
 Frame = +1

Query: 61  ISVKVHPVVLFQIVDAYERRNADSHRVIGTLLGT--SDKGVVEVTNCFCVPHKEHADQVE 234
           +++ + P VLF I+D   R++ ++ RVIGTLLGT   D   +E+ +CF VPH E ++QVE
Sbjct: 21  LNIVIEPAVLFSILDHSTRKSENNQRVIGTLLGTRSEDGREIEIKSCFAVPHNESSEQVE 80

Query: 235 AELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREP---------- 384
            E+ Y   +Y L+ + N  E +VGW+AT  ++   S++I   Y+    EP          
Sbjct: 81  VEMEYHRAMYHLHLKANPREVVVGWYATSPDLDAFSALIQNLYASPA-EPGTAPLGTYPH 139

Query: 385 --VHVTLDTSLAGGRMGLRAYVCVPLGVPNG-KQGCMFTPVDVTL 510
             VH+T++T ++   + ++ YV  P+G+       C F P   T+
Sbjct: 140 PCVHLTVNTDVS-SPLAIKTYVSSPVGITERLADSCAFVPTPFTI 183


>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 68.9 bits (161), Expect = 4e-13
 Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 4/132 (3%)
 Frame = +1

Query: 67  VKVHPVVLFQIVDAYERR-NADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEA-- 237
           V VHP+VL   VD+Y R       RV+G LLG ++  VV V N + +P +E         
Sbjct: 17  VIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASVWF 76

Query: 238 -ELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLA 414
            + N+   + E+ +++N++E +VGW+ TG ++      I+    +    PV V +D    
Sbjct: 77  LDHNFMESMNEMFKKINANEKLVGWYHTGPQLRPSDLEINNLLKKYIPNPVLVIIDVKPK 136

Query: 415 GGRMGLRAYVCV 450
              +   AY  +
Sbjct: 137 SVGLPTNAYFAI 148


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 109 YERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE 234
           Y+ R  DSHR I  L GT  +  +   +   + +K H  ++E
Sbjct: 483 YDHRLRDSHREIYQLQGTGYRPFLRANDNASINNKNHHKELE 524


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 45   KNGSQY*CEGPSCCFISNCGRIRTSKCRF 131
            K   Q+  + P C  IS   R   SKCR+
Sbjct: 1951 KQAPQFQSKSPECVIISTMNRSCDSKCRY 1979


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = +1

Query: 55  LNISVKVHPVVLFQIVDAYERRNADSHRVI-----GTLLGTSDKGVVEVTNCFCVPHKEH 219
           LNI ++   +V+ ++++  ++RN D H  I       +  TSD  ++ + N F +    H
Sbjct: 253 LNIIIQEVDIVIGELIEGLKKRNIDKHVNIIFLSDHGMAPTSDNRLIWLDNMFNLSAVAH 312

Query: 220 AD 225
            D
Sbjct: 313 RD 314


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -1

Query: 492 SEHATLLSIWHSQWYTNICT*THSTSSQRSVQSNMDRLTAFTGI 361
           S  A +L  +   W+ N+      T S+RS+ +N D +T+F+ +
Sbjct: 410 SAKARILDSFCIDWHLNV-----QTMSERSILTNRDFITSFSAV 448


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 120 KCRFSQSYRHLIGHERQRSGG-SNQLLLRATQRTCRSSRSGT*LRDGCL 263
           + R S SY   I  ++  SGG + + L  A  RTC  S + T L + CL
Sbjct: 201 RSRSSSSYS--INKKKGTSGGQATRHLTYALSRTCSQSSNTTSLLESCL 247


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 483 HVHSCRCHSHM 515
           H+H CRCH+++
Sbjct: 69  HIHCCRCHTYI 79


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 74  TFTLILRAIFNSTKTTNPETQST 6
           TF L++ A+FNST TT P   S+
Sbjct: 71  TFHLVI-AVFNSTSTTLPSATSS 92


>SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 325

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 516 ACE--SDIYRSEHATLLSIWHSQWYTNICT*THSTSS 412
           AC+  +D+YRS+   L S W SQ  T+I +   ST +
Sbjct: 93  ACQENADLYRSQQRKLKSRWDSQ--TDILSQIESTKA 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,482,786
Number of Sequences: 5004
Number of extensions: 53891
Number of successful extensions: 158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)