Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18k08
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 28 1.4
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 5.5
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 26 5.5
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 25 7.2
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 25 7.2
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|... 25 7.2
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 25 7.2
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom... 25 7.2
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 25 9.5
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 9.5
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/69 (23%), Positives = 29/69 (42%)
Frame = +3
Query: 237 AQSENETNTEPVVVHEQGINHTEGGWPREVHIYNEDHVNRHRRRVMHDDNYVHTVLNLAP 416
AQ TN + V HE H H +N DH++++ + H+ + + N
Sbjct: 516 AQKMGYTNDDHVSQHEH--THENSQEHHHEHNHNHDHIHKYNEKCDHESISLQNLDNDHH 573
Query: 417 VMNHYLDQN 443
+H+ + N
Sbjct: 574 CHHHHENHN 582
>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 435
Score = 25.8 bits (54), Expect = 5.5
Identities = 23/104 (22%), Positives = 46/104 (44%)
Frame = +3
Query: 147 HIVDSIIPNKDEQKQYMLRNPVHRLVQSTMAQSENETNTEPVVVHEQGINHTEGGWPREV 326
++ + + PNK E K + L+N L + T + + + V + + WPR
Sbjct: 10 NMAELLHPNKVEMKPF-LKNLDKNLFKKTYNLVAAKVSPKKVGLLNKVCKKDLLDWPRVK 68
Query: 327 HIYNEDHVNRHRRRVMHDDNYVHTVLNLAPVMNHYLDQNNAIEL 458
H+Y + N + +++ D + L+ ++ +NN IEL
Sbjct: 69 HVYQQ---NNEKLVLLNRDASLDGTRGLSDATVSFIKENN-IEL 108
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.8 bits (54), Expect = 5.5
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Frame = +3
Query: 351 NRHRRRVMHDDNYVHTVLNLAPVMNHYLDQNN--AIELYQAYFC----DMESQKPVEKYD 512
+R R HDD Y + +P ++N A E ++Y MES P E YD
Sbjct: 276 SRDDGRPSHDDEYRRDAYSRSPSPRRDREENRSPAYEGSKSYSAAPEASMESSAPTESYD 335
Query: 513 VKIANVFRDP 542
A+ + P
Sbjct: 336 KPAASEEQQP 345
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 498 VEKYDVKIANVFRDPSSRPISCIQWTNEKK 587
+E + + IAN F+ S S + W NE++
Sbjct: 20 IEDFSLAIANRFKQMGSHSDSEVDWDNEEE 49
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 333 YNEDHVNRHRRRVMHDDNYVHTVLNL 410
Y +H+N + RRV D Y+ T+L L
Sbjct: 452 YVSNHLNFNVRRVKSDTVYIPTILQL 477
>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
Met9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 7.2
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = +3
Query: 135 KVPAHIVDSIIPNKDEQK 188
K+P H +D+++P KD+ +
Sbjct: 231 KIPQHFMDTLVPVKDDDE 248
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -1
Query: 398 SMYVVIVVHNATAMPIYVVFVVNVHLTGPSTFSVVNALFVNYH 270
S+ +V+ T ++ + +HL P F+++ LF NYH
Sbjct: 691 SLAIVLPQVGYTQGMSWIAGALLMHLPAPQAFALLVFLFKNYH 733
>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = +3
Query: 501 EKYDVKIANVFRDPSSRPISCIQWTNEKKPKLVVAYSN 614
EKY+ IA R + ++W +PK V ++++
Sbjct: 96 EKYNTDIAEDLRQKIRAEVDGVEWVKVDRPKSVSSHAS 133
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +3
Query: 99 LRKNFGRQTL--FQ-KVPAHIVDSIIPNKDEQKQYMLRNPVHRLVQSTMAQSENE 254
L K+ GR + FQ K +D ++ +Q +L +P+H V + + ENE
Sbjct: 497 LSKSVGRMYINNFQDKGRQETIDLLLGRLIDQHPVILYDPIHEYVNHELRKRENE 551
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -3
Query: 504 SRQAFATPYRRSRLGIIRLRCFDLDND 424
S + +P+ +GI+ L+ F+ D+D
Sbjct: 2251 SNNHWTSPFLAQNVGIVHLKAFEFDDD 2277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,493
Number of Sequences: 5004
Number of extensions: 60709
Number of successful extensions: 183
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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