Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18k08
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0254 + 16236689-16236793,16237760-16237808,16237988-162380... 29 3.2
04_04_0505 + 25719959-25720052,25721548-25722266 29 3.2
04_03_0536 - 16875813-16876087,16877023-16877091,16877134-168772... 29 3.2
09_04_0404 + 17322664-17322718,17323676-17323849,17324695-173248... 27 9.9
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452... 27 9.9
03_02_0161 + 6046949-6047063,6048759-6048844,6049029-6049094,604... 27 9.9
01_03_0014 + 11655216-11655287,11657833-11658048,11659848-116619... 27 9.9
>10_08_0254 +
16236689-16236793,16237760-16237808,16237988-16238076,
16238178-16238234,16238684-16238746,16238828-16238893,
16239520-16239606,16239691-16239784,16240351-16240673,
16241022-16241048,16241065-16241145,16241445-16241476,
16242126-16242266,16242455-16242516,16243170-16243387
Length = 497
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +3
Query: 414 PVMNHYLDQNNAIELYQAY-FCDMESQKPVEKYDVKIANVFRDPSSRPISCIQWTNEKK 587
PV+N Y+ ++ L+Q Y F + S++ + Y +KI N+ + +PI + + +KK
Sbjct: 50 PVVNVYVPKDRVTNLHQGYGFVEFRSEEDAD-YAIKILNMIK-LYGKPIRVNKASQDKK 106
>04_04_0505 + 25719959-25720052,25721548-25722266
Length = 270
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3
Query: 540 DHGKHSLFLHRISRQAFATP 481
DHG+ L LH R+AFATP
Sbjct: 62 DHGRKPLTLHEGRREAFATP 81
>04_03_0536 -
16875813-16876087,16877023-16877091,16877134-16877292,
16877307-16877636,16878764-16879030,16880033-16880077,
16880159-16880261
Length = 415
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/49 (26%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = +3
Query: 132 QKVPAHIV--DSIIPNKDEQKQYMLRNPVHRLVQSTMAQSENETNTEPV 272
+++P H+ +S++ N+D+ + +L+NP +++ + T N+T E V
Sbjct: 155 ERLPVHLPLGNSVVYNEDDSLEQVLQNPWNQITKLTAWFEANKTYPEAV 203
>09_04_0404 +
17322664-17322718,17323676-17323849,17324695-17324876,
17325312-17325417,17325708-17325784,17326485-17326572,
17327320-17327509,17328353-17328479,17328584-17328664,
17328815-17328916,17329042-17329137,17329279-17329353,
17329746-17329865,17330319-17330447,17330762-17330839,
17331330-17331416,17333538-17333651,17334294-17334362,
17334741-17334785
Length = 664
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +3
Query: 168 PNKDEQKQYMLRNPVHR--LVQSTMAQSENETNTEPVVVH 281
P +EQ++YML P + L Q+T + + E +VVH
Sbjct: 255 PTPEEQRKYMLNLPKSKRMLTQNTFSTVQTPEFYEKIVVH 294
>08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,
4521632-4521723,4522226-4522342,4522641-4522704,
4523175-4523228,4523579-4523666,4523788-4524023,
4525258-4525478,4525634-4525827,4525938-4525995,
4526771-4526824,4526851-4527473,4527580-4527640,
4528417-4528590,4528803-4529063,4529201-4529320,
4529388-4530022,4530062-4530828,4530915-4531012,
4531101-4531155,4531230-4531318
Length = 2010
Score = 27.5 bits (58), Expect = 9.9
Identities = 34/127 (26%), Positives = 48/127 (37%), Gaps = 15/127 (11%)
Frame = +3
Query: 78 SDYGYTKLRKNFGRQTLF--QKVPAHIVDSIIPNKDEQKQYMLRNPVHRLVQSTMAQSEN 251
SD G + QT+ Q+ P H + +Q+Q NP H +Q + Q
Sbjct: 1823 SDVGSQSSMQGSPNQTMLTSQQAPLHSSSPLA----QQQQQRYMNPSHNNIQRLVMQQNR 1878
Query: 252 ETNTE-----PV--VVHEQGI------NHTEGGWPREVHIYNEDHVNRHRRRVMHDDNYV 392
NT+ PV V H Q I T+ G P V +N+ R+ HD V
Sbjct: 1879 HMNTDGRIESPVDQVQHNQAIPSTSIAKSTDSGSPGGV-----SSINQRRQESSHDPTTV 1933
Query: 393 HTVLNLA 413
+ LA
Sbjct: 1934 PSTSQLA 1940
>03_02_0161 +
6046949-6047063,6048759-6048844,6049029-6049094,
6049408-6049860,6049960-6050115,6050319-6050465,
6050570-6050641,6050730-6051293
Length = 552
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +3
Query: 318 REVHIYNEDHV---NRHRRRVMHDDNYVHTVLNLAPVMNHYLDQNNAIELYQAYFCDMES 488
+++ IY+E++ +R++V+ + HT+ L + D NA+ YQ +
Sbjct: 234 KQMEIYHEENKLLEKSNRQQVLDIERLTHTIAELEESILSTGDVANAVRFYQNQAAKLNE 293
Query: 489 QKPVEKYDVKIANVF 533
+K + ++ A V+
Sbjct: 294 EKRTLERELARAKVY 308
>01_03_0014 +
11655216-11655287,11657833-11658048,11659848-11661912,
11662966-11663013,11663081-11663328,11663429-11663558,
11663707-11663983,11664102-11664180,11664311-11664397,
11664586-11664618
Length = 1084
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 447 AIELYQAYFCDMESQKPVEKYDVKIANVFRDPSSRP 554
AIE+ +A +C PV DVK AN+ D + P
Sbjct: 256 AIEVAEALWCMHSMYSPVLHGDVKPANILLDENHSP 291
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,250,984
Number of Sequences: 37544
Number of extensions: 362132
Number of successful extensions: 993
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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