Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18k08
(653 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 26 0.28
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 26 0.37
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 26 0.37
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 26 0.37
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 23 1.9
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 23 1.9
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 23 1.9
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 23 2.6
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 23 3.4
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 23 3.4
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 23 3.4
AY545000-1|AAS50159.2| 126|Apis mellifera profilin protein. 23 3.4
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 23 3.4
L10433-1|AAA27732.1| 149|Apis mellifera transposase protein. 22 4.5
L10430-1|AAA27731.1| 150|Apis mellifera transposase protein. 22 4.5
U15955-1|AAA67443.1| 95|Apis mellifera defensin precursor prot... 21 7.9
AY496432-1|AAS75803.1| 95|Apis mellifera defensin/royalisin pr... 21 7.9
AJ308527-1|CAC33429.1| 57|Apis mellifera defensin protein. 21 7.9
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 26.2 bits (55), Expect = 0.28
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Frame = +3
Query: 180 EQKQYMLRNPVHRLVQSTMAQS----ENETNTEPVVVHEQGINHTEGGWPREVHIYNEDH 347
EQK Y N + ++ +S E E + EP ++ N T + YN ++
Sbjct: 46 EQKSYKNENSYRKYRETWKERSRDRTERERSREPKIISSLS-NRTIHNNNNYKYNYNNNN 104
Query: 348 VNRHRRRVMHDDNYVHTVLNLAPV 419
N + +++ ++ NY+ + PV
Sbjct: 105 YNNNCKKLYYNINYIEQIPVPVPV 128
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 25.8 bits (54), Expect = 0.37
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Frame = +3
Query: 180 EQKQYMLRNPVHRLVQSTMAQS----ENETNTEPVVVHEQGINHTEGGWPREVHIYNEDH 347
EQK Y N + ++ +S E E + EP ++ N T + YN ++
Sbjct: 46 EQKSYKNENSYRKYRETWKERSRDRTERERSREPKIISSLS-NKTIHNNNNYKYNYNNNN 104
Query: 348 VNRHRRRVMHDDNYVHTVLNLAPV 419
N + +++ ++ NY+ + PV
Sbjct: 105 YNNNCKKLYYNINYIEQIPIPVPV 128
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 25.8 bits (54), Expect = 0.37
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Frame = +3
Query: 180 EQKQYMLRNPVHRLVQSTMAQS----ENETNTEPVVVHEQGINHTEGGWPREVHIYNEDH 347
EQK Y N + ++ +S E E + EP ++ N T + YN ++
Sbjct: 46 EQKSYKNENSYRKYRETWKERSRDRTERERSREPKIISSLS-NKTIHNNNNYKYNYNNNN 104
Query: 348 VNRHRRRVMHDDNYVHTVLNLAPV 419
N + +++ ++ NY+ + PV
Sbjct: 105 YNNNCKKLYYNINYIEQIPIPVPV 128
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 25.8 bits (54), Expect = 0.37
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Frame = +3
Query: 180 EQKQYMLRNPVHRLVQSTMAQS----ENETNTEPVVVHEQGINHTEGGWPREVHIYNEDH 347
EQK Y N + ++ +S E E + EP ++ N T + YN ++
Sbjct: 46 EQKSYKNENSYRKYRETWKERSRDRTERERSREPKIISSLS-NKTIHNNNNYKYNYNNNN 104
Query: 348 VNRHRRRVMHDDNYVHTVLNLAPV 419
N + +++ ++ NY+ + PV
Sbjct: 105 YNNNCKKLYYNINYIEQIPIPVPV 128
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 23.4 bits (48), Expect = 1.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 80 RLWLYKTPEKLRKADIISKSASP 148
R WL K P + ++ D+IS+ P
Sbjct: 402 RSWLSKFPTRSKRIDVISRIFFP 424
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 23.4 bits (48), Expect = 1.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 80 RLWLYKTPEKLRKADIISKSASP 148
R WL K P + ++ D+IS+ P
Sbjct: 402 RSWLSKFPTRSKRIDVISRIFFP 424
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 23.4 bits (48), Expect = 1.9
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Frame = -1
Query: 404 QYSMYVVIVVHNATAMPIYV-VFVVNVHLTGPSTFSV---VNALFVNY 273
+Y ++ +I+V + I++ V V+NVH PST ++ V +F+N+
Sbjct: 314 KYLLFTMILV----TLSIWITVCVLNVHFRSPSTHNMSPWVRQVFLNW 357
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 23.0 bits (47), Expect = 2.6
Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
Frame = +3
Query: 174 KDEQKQY-MLRNPVHRLVQSTMAQSENETNTEPVVVHEQGINHTEGGWPREVHIYNEDHV 350
K++ ++Y L N +L++ ++ + E EQ E + + E
Sbjct: 235 KEKDRRYEKLHNEKEKLLEERTSRKRYSRSRE----REQNSYKNEREYRKYRETSKERSR 290
Query: 351 NRHRRRVMHDDNYVHTVLNLAPVMNHYLDQNNAIELY 461
+R R + + ++ N N+Y + NN +LY
Sbjct: 291 DRRERERSKEPKIISSLSNSCNYSNNYYNNNNYKKLY 327
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 22.6 bits (46), Expect = 3.4
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 399 VLNLAPVMNHYLDQNNAIELYQ 464
+L AP + Y+DQ++ IE+Y+
Sbjct: 497 ILMDAPHIFEYVDQDHIIEIYR 518
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 22.6 bits (46), Expect = 3.4
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = +3
Query: 330 IYNEDHVNRHRRRVMHDDNYVHTVLNLAPVMNHYLDQNNAIELYQAYFCDMESQKPVEKY 509
I+ D V R +M DN +L+ + HY L +F D+ S P++ Y
Sbjct: 131 IFLIDIVVNFRTGIMQQDNAEQVILDPKLIAKHY--------LRTWFFLDLISSIPLD-Y 181
Query: 510 DVKIANVFRD 539
I N F+D
Sbjct: 182 IFLIFNQFQD 191
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 22.6 bits (46), Expect = 3.4
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = +3
Query: 330 IYNEDHVNRHRRRVMHDDNYVHTVLNLAPVMNHYLDQNNAIELYQAYFCDMESQKPVEKY 509
I+ D V R +M DN +L+ + HY L +F D+ S P++ Y
Sbjct: 131 IFLIDIVVNFRTGIMQQDNAEQVILDPKLIAKHY--------LRTWFFLDLISSIPLD-Y 181
Query: 510 DVKIANVFRD 539
I N F+D
Sbjct: 182 IFLIFNQFQD 191
>AY545000-1|AAS50159.2| 126|Apis mellifera profilin protein.
Length = 126
Score = 22.6 bits (46), Expect = 3.4
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -1
Query: 524 RYFYIVFLDRLLRLHIAEVGL 462
RY Y+ DR++R + +VG+
Sbjct: 67 RYIYLSGTDRVIRAKLGKVGV 87
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 22.6 bits (46), Expect = 3.4
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = +3
Query: 330 IYNEDHVNRHRRRVMHDDNYVHTVLNLAPVMNHYLDQNNAIELYQAYFCDMESQKPVEKY 509
I+ D V R +M DN +L+ + HY L +F D+ S P++ Y
Sbjct: 131 IFLIDIVVNFRTGIMQQDNAEQVILDPKLIAKHY--------LRTWFFLDLISSIPLD-Y 181
Query: 510 DVKIANVFRD 539
I N F+D
Sbjct: 182 IFLIFNQFQD 191
>L10433-1|AAA27732.1| 149|Apis mellifera transposase protein.
Length = 149
Score = 22.2 bits (45), Expect = 4.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 177 LCLV*WNLQYGLALFEIMSAFRSFSGVLYSHNL 79
L V W+ + G+ FE++S R+ + V+Y L
Sbjct: 67 LLSVWWDYK-GIVYFELLSPNRTINSVVYIEQL 98
>L10430-1|AAA27731.1| 150|Apis mellifera transposase protein.
Length = 150
Score = 22.2 bits (45), Expect = 4.5
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -3
Query: 177 LCLV*WNLQYGLALFEIMSAFRSFSGVLYSHNL 79
L LV W+ + G+ FE++ R+ + V+Y +L
Sbjct: 68 LLLVWWDHK-GIVYFELLPPNRTINSVVYIEHL 99
>U15955-1|AAA67443.1| 95|Apis mellifera defensin precursor
protein.
Length = 95
Score = 21.4 bits (43), Expect = 7.9
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +3
Query: 327 HIYNEDHVNRHRR 365
H NE+ +RHRR
Sbjct: 31 HFENEERADRHRR 43
>AY496432-1|AAS75803.1| 95|Apis mellifera defensin/royalisin
precursor protein.
Length = 95
Score = 21.4 bits (43), Expect = 7.9
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +3
Query: 327 HIYNEDHVNRHRR 365
H NE+ +RHRR
Sbjct: 31 HFENEERADRHRR 43
>AJ308527-1|CAC33429.1| 57|Apis mellifera defensin protein.
Length = 57
Score = 21.4 bits (43), Expect = 7.9
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +3
Query: 327 HIYNEDHVNRHRR 365
H NE+ +RHRR
Sbjct: 6 HFENEERADRHRR 18
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,885
Number of Sequences: 438
Number of extensions: 4054
Number of successful extensions: 20
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -