Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18k07
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0131 + 8779006-8779073,8779517-8779662,8779739-8780794,878...    28   6.7  
10_08_0711 + 20073470-20073799,20073882-20074274                       27   8.9  

>05_03_0131 +
           8779006-8779073,8779517-8779662,8779739-8780794,
           8781070-8781232,8781423-8781494,8782076-8782147,
           8782643-8782815,8782958-8783163,8783277-8783403,
           8783793-8783864,8783984-8784176,8784298-8784768,
           8785635-8785740
          Length = 974

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +2

Query: 2   IITNI-MRRWEHLFVVFASIIVLVNGKIDS 88
           +I N+ M +WE  FVV  S++  ++G++D+
Sbjct: 41  VILNVSMSQWEAAFVVTLSLLFCIHGQLDN 70


>10_08_0711 + 20073470-20073799,20073882-20074274
          Length = 240

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 20/73 (27%), Positives = 30/73 (41%)
 Frame = +2

Query: 14  IMRRWEHLFVVFASIIVLVNGKIDSEVEAESGEKYDSEERIGPAITQINRHPYVGTLIKN 193
           ++  W   +V  A + + + G     +E + G K D   R  P       H  V  LI N
Sbjct: 11  LLGMWASPYVSRAKLALQLKGVSYEYIEEDLGNKSDLFLRSNPV------HKTVPVLIHN 64

Query: 194 GTYICSAVILNTY 232
           G  IC + I+  Y
Sbjct: 65  GNPICESSIIVQY 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,394,508
Number of Sequences: 37544
Number of extensions: 323079
Number of successful extensions: 801
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)