Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18k07
(612 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99277-6|CAB16484.1| 677|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z82075-3|CAB04929.2| 784|Caenorhabditis elegans Hypothetical pr... 29 2.6
AF293972-1|AAG02478.1| 784|Caenorhabditis elegans auxilin protein. 29 2.6
Z70212-4|CAA94164.1| 322|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z68114-9|CAA92156.1| 320|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z72512-1|CAA96663.2| 326|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr... 27 8.0
U40410-5|AAA81394.3| 1199|Caenorhabditis elegans Hypothetical pr... 23 8.2
>Z99277-6|CAB16484.1| 677|Caenorhabditis elegans Hypothetical
protein Y53C12A.1 protein.
Length = 677
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 119 DSEERIGPAITQINRHPYVGT-LIKNGTYICSAVILNTYWLA 241
DS+ RI P + HP + L+K GTY+ ILN ++ A
Sbjct: 337 DSDPRIRPTSRDLLDHPVIKKKLMKRGTYVKCISILNGFFYA 378
>Z82075-3|CAB04929.2| 784|Caenorhabditis elegans Hypothetical
protein W07A8.3 protein.
Length = 784
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 153 CVIAGPILSSLSYFSPDSASTSLSILPLTNTIILAKTTNKC 31
C+IA +S +S F DS LP+T + L +T + C
Sbjct: 177 CLIASRTISRVSEFMSDSLPNRFDRLPVTYHLFLEQTKHVC 217
>AF293972-1|AAG02478.1| 784|Caenorhabditis elegans auxilin protein.
Length = 784
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 153 CVIAGPILSSLSYFSPDSASTSLSILPLTNTIILAKTTNKC 31
C+IA +S +S F DS LP+T + L +T + C
Sbjct: 177 CLIASRTISRVSEFMSDSLPNRFDRLPVTYHLFLEQTKHVC 217
>Z70212-4|CAA94164.1| 322|Caenorhabditis elegans Hypothetical
protein R04D3.6 protein.
Length = 322
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/57 (21%), Positives = 28/57 (49%)
Frame = -1
Query: 282 YDDIMALSKQSDSVASQYVLRITALQMYVPFLIRVPTYGCRFICVIAGPILSSLSYF 112
Y + +S + +V+ +T +Q +P++ +P Y + C++ G + L +F
Sbjct: 221 YHQMENMSAPRQQLYKSFVMGLT-IQCVLPYVFYIPIYTLYYYCLLTGEEILFLEFF 276
>Z68114-9|CAA92156.1| 320|Caenorhabditis elegans Hypothetical
protein F17A2.12 protein.
Length = 320
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -1
Query: 261 SKQSDSVASQYVLRITALQMYVPFLIRVPTYGCRFICVIAGPILSSLSYF 112
SK S +V +T +Q ++P + VP +G F C++ + YF
Sbjct: 225 SKWKKSQIQVFVKGLT-IQAFLPLIFYVPVFGLYFYCILTHTEILFQQYF 273
>Z72512-1|CAA96663.2| 326|Caenorhabditis elegans Hypothetical
protein R07B5.3 protein.
Length = 326
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -1
Query: 138 PILSSLSYFSPDSASTSLSILPLTNTIILAKTTNKCSQRRIMFVI 4
P+L ++ YFS S+ + T T+IL NK Q I+F++
Sbjct: 110 PLLVAVYYFSNYSSQLYTVLFCSTRTLILFNEKNKIYQLCILFLV 154
>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical
protein F25C8.3b protein.
Length = 3175
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -1
Query: 138 PILSSLSYFSPDSASTSLSILPLTNTIILAKTTNKCSQRRIM 13
P+L S + S S+++ + LT TT+ CSQ+ ++
Sbjct: 431 PVLESSMFLSTTSSASDVPPFVLTRASTAEDTTSSCSQQTVI 472
>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical
protein F25C8.3a protein.
Length = 3184
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -1
Query: 138 PILSSLSYFSPDSASTSLSILPLTNTIILAKTTNKCSQRRIM 13
P+L S + S S+++ + LT TT+ CSQ+ ++
Sbjct: 431 PVLESSMFLSTTSSASDVPPFVLTRASTAEDTTSSCSQQTVI 472
>U40410-5|AAA81394.3| 1199|Caenorhabditis elegans Hypothetical
protein C54G7.4 protein.
Length = 1199
Score = 23.4 bits (48), Expect(2) = 8.2
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +2
Query: 131 RIGPAITQINRHPYVGTLIKNGTYI-CSAVILNTYW 235
+IG T +N+ P TL+ N +A ++N W
Sbjct: 42 KIGTDATDLNKSPNAATLVVNQALEGHNATVMNATW 77
Score = 22.2 bits (45), Expect(2) = 8.2
Identities = 19/101 (18%), Positives = 45/101 (44%)
Frame = +2
Query: 218 ILNTYWLATLSDCFDRAIISSYVTHKNLGNFAIRAGSSYNNKGGTIHKIKLLINNFDLKV 397
+ N W + + +++++ S + AI A + N GT+ ++ ++++
Sbjct: 98 MFNEQWCEEMINNRNKSVVVSICWNLEGTKIAI-AYADGNVIVGTLEGNRIWNKELEIQL 156
Query: 398 SAVKLDIPLEFGSQVDAARLPSPDQEVMLGYLASMTAWTPT 520
+A +LDIP+ D + + +E + + W+PT
Sbjct: 157 AACELDIPMHCLEAEDLEQALA-KKEHQKEEIVCLKYWSPT 196
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,130,565
Number of Sequences: 27780
Number of extensions: 285058
Number of successful extensions: 781
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -