Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18k06
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...   110   2e-25
SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase Mpg1|Sc...    39   7e-04
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    28   0.99 
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   2.3  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    26   5.3  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    26   5.3  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   7.0  

>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score =  110 bits (264), Expect = 2e-25
 Identities = 58/179 (32%), Positives = 103/179 (57%)
 Frame = +3

Query: 87  KMEMDKENIVQAVVIMDTFNSNFSPLTDNKPMGFLEVAGVPLIDYVLESLALGGVGEAIL 266
           K+E  K + +QA+V+ D++N  F PLT +KP   L +A  PLI+Y  E LAL GV E  +
Sbjct: 10  KLEKPK-HALQAIVLSDSYNYRFRPLTLDKPRCLLPLANTPLIEYTFEFLALAGVQEVYV 68

Query: 267 FCCQNGQKIKEHVQKHQDNKSLWSLTMDIQILMSDTCQTMGDVMRELDAAALLKGYFVLA 446
           FCC +  +I+E+++K + N  L S    +  ++S    ++GD +RELD+  L+   F+L 
Sbjct: 69  FCCAHAGQIREYIEKSKWN--LPSSPFSVNTIVSRESLSVGDALRELDSKQLITSDFILV 126

Query: 447 GINSITNMNFASLLEQHKQTCKKDKGTAMTLVYKKLSWEHPLISSDRSTFLAANENTKK 623
             + ++N+    +L++H++  + DK   MT+V ++ S  H   +   S+    ++ T +
Sbjct: 127 SGDVVSNVPLNEVLKEHRKRREDDKNAIMTMVVREASPFHRTRARTESSVFVIDKKTSQ 185


>SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase
           Mpg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 363

 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 29/129 (22%), Positives = 60/129 (46%)
 Frame = +3

Query: 114 VQAVVIMDTFNSNFSPLTDNKPMGFLEVAGVPLIDYVLESLALGGVGEAILFCCQNGQKI 293
           ++A++++  F +   PLT   P   +E    P+I + +E+LA  GV + +L      + +
Sbjct: 1   MKALILVGGFGTRLRPLTLTLPKPLVEFGNKPMILHQVEALAAAGVTDIVLAVNYRPEIM 60

Query: 294 KEHVQKHQDNKSLWSLTMDIQILMSDTCQTMGDVMRELDAAALLKGYFVLAGINSITNMN 473
            E ++K++   ++ ++T  ++   ++   T G +    D  A     F +   + I    
Sbjct: 61  VEALKKYEKEYNV-NITFSVE---NEPLGTAGPLALARDILAKDHSPFFVLNSDVICEYP 116

Query: 474 FASLLEQHK 500
           FA L   HK
Sbjct: 117 FADLAAFHK 125


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1254

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 510  KKDKGTAMTLVYKKLSWEHPLISSDRSTFLAANENTKKVL 629
            K+   T MT +Y +L     ++S+ RSTF+     TKK+L
Sbjct: 1053 KRASITPMTSIYTRLGANDDIMSA-RSTFMVELSETKKIL 1091


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = -3

Query: 463 VMLLIPASTKYPFSKAAASNSLITSPMV*QVSDIKIWI 350
           + L +PA ++Y FS      S++ SP++   S++ + +
Sbjct: 134 ITLSMPAKSEYFFSSPLVKKSIVQSPIIANGSELNVGV 171


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = -1

Query: 456 Y*YQLAQNILSAKQQHLTLSSHHPWSDK----YLTSKSGY 349
           Y   +AQ ILS+ +  +TLS+ + W       Y T+KSG+
Sbjct: 228 YSVMIAQAILSSSECMMTLSNIYSWISTHYPYYRTTKSGW 267


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 414 AALLKGYFVLAGINSITNMNFASLLEQHKQ 503
           A+L K +F+    N I N N  SL +Q +Q
Sbjct: 334 ASLSKAFFIFDNQNEIFNFNSDSLQQQFRQ 363


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 322 TSLCGVLLWISRF*CQILVRPW 387
           +S+CG   + S   C+ LVRPW
Sbjct: 339 SSICGKRNYFSSVICKELVRPW 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,427,512
Number of Sequences: 5004
Number of extensions: 46315
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)