Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18k06
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1184 + 34802749-34802892,34802981-34803220,34803636-348039... 97 8e-21
08_01_0849 - 8336065-8336736,8336812-8337051,8337143-8337205,833... 32 0.44
01_06_1334 + 36389179-36389289,36389777-36389839,36389930-363901... 32 0.44
03_02_0495 - 8879612-8880283,8880369-8880608,8880713-8880775,888... 30 1.3
06_03_1274 + 28897491-28897707,28897804-28897935,28898029-288980... 30 1.8
02_05_1061 - 33825948-33825995,33826094-33826243,33827154-338273... 29 4.1
11_06_0620 + 25585060-25585283,25585355-25585538 28 7.2
>02_05_1184 +
34802749-34802892,34802981-34803220,34803636-34803950,
34804030-34804209,34804312-34804504,34805062-34805324,
34805461-34805590,34805719-34805786,34805951-34806199,
34806284-34806357,34808052-34808143,34808603-34808685,
34810337-34810408,34810558-34810683,34810996-34811037
Length = 756
Score = 97.5 bits (232), Expect = 8e-21
Identities = 50/145 (34%), Positives = 78/145 (53%)
Frame = +3
Query: 114 VQAVVIMDTFNSNFSPLTDNKPMGFLEVAGVPLIDYVLESLALGGVGEAILFCCQNGQKI 293
+QAV++ D+F F P+T +P L + VP+I+Y L L GV E +FCC + Q++
Sbjct: 26 LQAVLLADSFTLKFRPITLERPKVLLPLVNVPMIEYTLSWLESAGVEECFVFCCAHAQQV 85
Query: 294 KEHVQKHQDNKSLWSLTMDIQILMSDTCQTMGDVMRELDAAALLKGYFVLAGINSITNMN 473
KEH+ K + M + + S + GD +R + ++ G FVL ++I+NMN
Sbjct: 86 KEHLGKAGWTGKPAAREMTVTAVESHDAISAGDALRVMYGRGVIHGDFVLISGDTISNMN 145
Query: 474 FASLLEQHKQTCKKDKGTAMTLVYK 548
L++HK KKD MT+V K
Sbjct: 146 LKDALQEHKDRRKKDPLAVMTMVIK 170
>08_01_0849 -
8336065-8336736,8336812-8337051,8337143-8337205,
8337686-8337796
Length = 361
Score = 31.9 bits (69), Expect = 0.44
Identities = 30/131 (22%), Positives = 62/131 (47%), Gaps = 2/131 (1%)
Frame = +3
Query: 114 VQAVVIMDTFNSNFSPLTDNKPMGFLEVAGVPLIDYVLESLALGGVGEAILFCCQNGQKI 293
++A++++ F + PLT + P ++ A P+I + +E+L GV E +L + +
Sbjct: 1 MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKEVGVTEVVLAINYRPEVM 60
Query: 294 KEHVQKHQDNKSLWSLTMDIQILMSDTCQTMGDVMRELDAAALLKG--YFVLAGINSITN 467
++ +D + ++T + ++ T G + D G +FVL + I+
Sbjct: 61 LNFLKDFEDKLGI-TITCSQE---TEPLGTAGPLALARDKLVDGSGEPFFVL-NSDVISE 115
Query: 468 MNFASLLEQHK 500
FA L++ HK
Sbjct: 116 YPFAELIKFHK 126
>01_06_1334 +
36389179-36389289,36389777-36389839,36389930-36390169,
36390245-36390916
Length = 361
Score = 31.9 bits (69), Expect = 0.44
Identities = 30/131 (22%), Positives = 62/131 (47%), Gaps = 2/131 (1%)
Frame = +3
Query: 114 VQAVVIMDTFNSNFSPLTDNKPMGFLEVAGVPLIDYVLESLALGGVGEAILFCCQNGQKI 293
++A++++ F + PLT + P ++ A P+I + +E+L GV E +L + +
Sbjct: 1 MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKEVGVTEVVLAINYRPEVM 60
Query: 294 KEHVQKHQDNKSLWSLTMDIQILMSDTCQTMGDVMRELDAAALLKG--YFVLAGINSITN 467
++ +D + ++T + ++ T G + D G +FVL + I+
Sbjct: 61 LNFLKDFEDKLGI-TITCSQE---TEPLGTAGPLALARDKLVDGSGEPFFVL-NSDVISE 115
Query: 468 MNFASLLEQHK 500
FA L++ HK
Sbjct: 116 YPFAELIKFHK 126
>03_02_0495 -
8879612-8880283,8880369-8880608,8880713-8880775,
8881510-8881620
Length = 361
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = +3
Query: 114 VQAVVIMDTFNSNFSPLTDNKPMGFLEVAGVPLIDYVLESLALGGVGEAIL 266
++A++++ F + PLT + P ++ P+I + +E+L GV E +L
Sbjct: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFGNKPMILHQIEALKEVGVTEVVL 51
>06_03_1274 +
28897491-28897707,28897804-28897935,28898029-28898096,
28898216-28898280,28898468-28898534,28898630-28898917,
28898995-28899102,28899236-28899487,28899918-28899997,
28900092-28900185,28900728-28900810,28901319-28901873,
28902085-28902616
Length = 846
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/84 (21%), Positives = 38/84 (45%)
Frame = +3
Query: 321 NKSLWSLTMDIQILMSDTCQTMGDVMRELDAAALLKGYFVLAGINSITNMNFASLLEQHK 500
+ +LW ++ + C T M ++ A+ L GY VL G+ T ++ ++ H
Sbjct: 225 SSTLWGSLDNLFVTNQSECSTTDGKMPSINDASELDGYRVLMGVRHSTRPHYG--VQFHP 282
Query: 501 QTCKKDKGTAMTLVYKKLSWEHPL 572
++ G + +KK++ + L
Sbjct: 283 ESVATHYGRQIFQNFKKITTDFGL 306
>02_05_1061 -
33825948-33825995,33826094-33826243,33827154-33827300,
33827381-33827468,33828569-33828714,33828861-33829089,
33829193-33829482
Length = 365
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 285 QKIKEHVQKHQDNKSLWSLTMDIQILMSDTCQTMGD 392
+ I+E ++ +DN+ L S + ++ D C+T+GD
Sbjct: 192 EDIREELKSKEDNQELCSQLGAVLGMLGDCCRTLGD 227
>11_06_0620 + 25585060-25585283,25585355-25585538
Length = 135
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = -3
Query: 574 INGCSQESFL*TK---VIAVPLSFLHVCLCCSRRLA 476
I+GC S ++ V+A SFLH C C R LA
Sbjct: 31 IHGCYSSSSSSSRAPVVVATTASFLHRCFLCRRELA 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,952,827
Number of Sequences: 37544
Number of extensions: 280707
Number of successful extensions: 710
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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