Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18k06
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54284-3|CAA91063.1|  666|Caenorhabditis elegans Hypothetical pr...    54   7e-08
AC006780-7|AAF60648.1|  394|Caenorhabditis elegans Hypothetical ...    31   0.92 
AC006780-6|AAF60647.1|  401|Caenorhabditis elegans Hypothetical ...    31   0.92 
Z68222-2|CAA92498.1|  105|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z75955-7|CAB00121.1|  550|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z46794-5|CAA86784.1|  381|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U41036-1|AAA82384.1|  315|Caenorhabditis elegans Hypothetical pr...    28   6.5  

>Z54284-3|CAA91063.1|  666|Caenorhabditis elegans Hypothetical
           protein D2085.3 protein.
          Length = 666

 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 40/173 (23%), Positives = 82/173 (47%), Gaps = 4/173 (2%)
 Frame = +3

Query: 87  KMEMDKENIVQAVVIMDTFNSNFSPLTDNKP-MGFLEVAGVPLIDYVLESLALGGVGEAI 263
           K    +E+ + A+VI+D F+  F+P  ++ P  G + +  VP I++ L  L    V   +
Sbjct: 10  KTPKKEEHPLVAIVILDAFDQRFAPTHESYPCFGTIPICNVPAINFALSWLMRTEVKNVM 69

Query: 264 LFCCQNGQKIKEHVQKHQDNKSLWSLTMD-IQILMSDTCQTMGDVMRELDAAALLKGYFV 440
           L            VQ+       W L  D   +++ D   ++GD MRE+    L+ G F+
Sbjct: 70  LVVSGLNADHATSVQRE------WRLAFDEFTVVVCDGASSVGDCMREIHNRELITGDFM 123

Query: 441 L-AGINSITNMNFASLLEQHKQTCKKDKGTAMTLVY-KKLSWEHPLISSDRST 593
           L +   ++ +   ++ + + ++  +++    MTL+Y  + + EH ++  +  T
Sbjct: 124 LISNPTAVVSSTLSAQISEFRKRRRENPDNVMTLLYSNRENPEHLVLGINSET 176


>AC006780-7|AAF60648.1|  394|Caenorhabditis elegans Hypothetical
           protein Y47D9A.1b protein.
          Length = 394

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 147 SNFSPLTDNKPMGFLEVAGVPLIDYVLESLA-LGGVGEAIL 266
           + F PL+   P     +AGVPLI++ ++ L  L G+ E +L
Sbjct: 9   TRFRPLSLQLPKPLFPIAGVPLIEHHIDQLCQLSGLSEILL 49


>AC006780-6|AAF60647.1|  401|Caenorhabditis elegans Hypothetical
           protein Y47D9A.1a protein.
          Length = 401

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 147 SNFSPLTDNKPMGFLEVAGVPLIDYVLESLA-LGGVGEAIL 266
           + F PL+   P     +AGVPLI++ ++ L  L G+ E +L
Sbjct: 16  TRFRPLSLQLPKPLFPIAGVPLIEHHIDQLCQLSGLSEILL 56


>Z68222-2|CAA92498.1|  105|Caenorhabditis elegans Hypothetical
           protein ZK1251.2 protein.
          Length = 105

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -3

Query: 469 ILVMLLIPASTKYPFSKAAASNSLITSPMV 380
           +  ++LIPAS +YPFS  + ++ +I   ++
Sbjct: 7   VFFLVLIPASQQYPFSLESLNDQIINEEVI 36


>Z75955-7|CAB00121.1|  550|Caenorhabditis elegans Hypothetical
           protein R07B7.12 protein.
          Length = 550

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 197 CRRASNRLCSRISCFGRSGRGNSVL 271
           C R++ R+CS+I  + RS R N  L
Sbjct: 23  CNRSTGRICSKIRLYHRSFRSNPSL 47


>Z46794-5|CAA86784.1|  381|Caenorhabditis elegans Hypothetical
           protein R06F6.5b protein.
          Length = 381

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 244 PKARDSRT*SIRGTPATSRKPIGLLS 167
           P A D RT  ++GTP+  + P GLL+
Sbjct: 347 PLAADQRTNILQGTPSVRKAPDGLLN 372


>U41036-1|AAA82384.1|  315|Caenorhabditis elegans Hypothetical
           protein T14E8.2 protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = -3

Query: 505 VCLCCSRRLAKFILVMLLIPASTKYPFSKAAASNSLITSPMV*QVSDIKI--WISIVRL 335
           +CLCC R   K+++V  LI       FS  A+S   I++P+   VS+ ++  W S++ L
Sbjct: 29  LCLCCRR--LKYVIV--LIRKLINLHFS--ASSRDRISNPVFFDVSESRMRRWFSVILL 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,423,670
Number of Sequences: 27780
Number of extensions: 263591
Number of successful extensions: 707
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)