Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18j23
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    25   4.1  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    24   9.4  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    24   9.4  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    24   9.4  

>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 298 QRQVSISKPPFSLMH*YIQC 239
           +R+  IS PP SL+H Y  C
Sbjct: 497 RRESKISNPPESLLHDYYAC 516


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -2

Query: 302 GSETSKYFKTSILANALIHPMQILQPLMSRYSKDWPDNPA-TLSKHQTST 156
           G   + Y +TS     L +P +        +S  WP NP+ + S H  +T
Sbjct: 443 GKLPTTYEETSSATGLLAYPNESHDIASEPFSISWPQNPSISGSVHSATT 492


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 292 VSDPGDDMALQAGLSVLEENNPNLFIK 372
           +SDP   + +   LS+L +NNP ++ K
Sbjct: 268 ISDPFLQVKILQFLSILGQNNPKIYDK 294


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 316  ALQAGLSVLEENNPNLFIKAD*LFSV 393
            AL    + LE +NP L++K   LFSV
Sbjct: 1244 ALMEFKTFLESSNPALYLKPQYLFSV 1269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,640,033
Number of Sequences: 5004
Number of extensions: 29135
Number of successful extensions: 68
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)