Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18j21
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   2.0  
SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...    26   4.6  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   4.6  
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...    26   4.6  
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    25   6.1  

>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 256

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 91  LWLVTDWNFTLITKIYWYF 35
           LW++ D    L+  +YWYF
Sbjct: 76  LWILADPAILLVQSVYWYF 94


>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 127 VKCLKEGQRIFVKSLDTKGAINVCKERHSAMDVIVEGTRTMQVEKLLRE 273
           +K LKE  R      D K   NV    + ++D I+E  RTM+ + L +E
Sbjct: 82  IKALKEPAR------DRKKDKNVAHSGNVSLDEIIEVARTMRFKSLAKE 124


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1337

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -2

Query: 545  FLALLFEIFNILTSLPSTVLPITVTVQIDGYWRSN 441
            F+  +   F ILT +P+ +  +T  + +   W+SN
Sbjct: 1013 FIQFIRVHFVILTPMPAVIFCVTAALTVTYSWKSN 1047


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 127 VKCLKEGQRIFVKSLDTKGAINVCKERHSAMDVIVEGTRTMQVEKLLRE 273
           +K LKE  R      D K   NV    + ++D I+E  RTM+ + L +E
Sbjct: 82  IKALKEPAR------DRKKDKNVAHSGNVSLDEIIEVARTMRFKSLAKE 124


>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 566 PSSQTAVFLALLFEIFNILTSLPST 492
           P+S TA F ++ F  FN L  LP++
Sbjct: 355 PASNTAAFSSISFGGFNSLNQLPTS 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,497,382
Number of Sequences: 5004
Number of extensions: 52504
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)