Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18j16
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    27   1.2  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    25   4.7  
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    25   6.2  

>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 245 YKFNIFSYALWCLENHW 195
           + F IF   LWCL+++W
Sbjct: 202 FVFQIFCCVLWCLDDYW 218


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 74  LCPQFEAVAADAHRPVTPPEIVLRA 148
           L  +FE + AD  RP TPP  + RA
Sbjct: 628 LINEFENLFADLERPSTPPVEIERA 652


>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 8/32 (25%), Positives = 21/32 (65%)
 Frame = -3

Query: 111 WASAATASNCGHNSL*FINSIHAITHFRFILY 16
           +AS+   +NC   ++ F+ +I  ++++ ++LY
Sbjct: 15  FASSDKPNNCSRKNMFFLKNIIVLSNYLYLLY 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,938,126
Number of Sequences: 5004
Number of extensions: 37764
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)