Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18j16
         (491 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1279 + 27510605-27513301                                         31   0.38 
03_05_0060 + 20363857-20365359                                         29   1.5  
12_02_1074 - 25849280-25849324,25849435-25849506,25849601-258496...    27   8.2  
05_04_0256 - 19465636-19466709,19467649-19467765,19468168-194682...    27   8.2  
04_03_0221 + 12890347-12890432,12890712-12890844,12891581-128916...    27   8.2  
02_05_0707 + 31096628-31096630,31097037-31097405,31097477-31101715     27   8.2  

>12_02_1279 + 27510605-27513301
          Length = 898

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +1

Query: 64  LQTVMSAIRGGCSGCPSPCNSTRNCTPCCSGGS 162
           L TV +A  GGC   P PC S   CTP  +G S
Sbjct: 298 LPTVWAAPTGGCD-LPLPCRSLGLCTPGTNGSS 329


>03_05_0060 + 20363857-20365359
          Length = 500

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 164 RDPPLQH--GVQFLVELQGDGHPLQPPRIADITVCNLLIA 51
           R PPL    GV  L  L   GHPL   R+A + + NL +A
Sbjct: 36  RRPPLDTAVGVTVLQHLMEAGHPLNSTRVARLGLRNLAVA 75


>12_02_1074 -
           25849280-25849324,25849435-25849506,25849601-25849663,
           25849756-25849865,25850648-25850761,25851601-25851681,
           25851736-25851850
          Length = 199

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
 Frame = +1

Query: 97  CSGCPSPCNSTRNCTP----CCSGGSLVTVYSQVAHI 195
           C GC +    TRN T     CC   +LV   S +AH+
Sbjct: 74  CGGCRTLLMYTRNATSVRCSCCDTVNLVRPVSSIAHL 110


>05_04_0256 -
           19465636-19466709,19467649-19467765,19468168-19468279,
           19469019-19469167,19469378-19469449,19469544-19469609,
           19471945-19472073,19474539-19474647,19475225-19475304,
           19475408-19475533,19475607-19475657,19475738-19475920,
           19476019-19476105,19476184-19476294,19476692-19476796,
           19477513-19477678,19477769-19477941,19478022-19478094,
           19479472-19479655,19479759-19480203
          Length = 1203

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 245 YKFNIFSYALWCLENHW 195
           + F +F   LWCL+ +W
Sbjct: 231 FVFQVFCVGLWCLDEYW 247


>04_03_0221 +
           12890347-12890432,12890712-12890844,12891581-12891607,
           12892285-12892650
          Length = 203

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 242 KFNIFSYALWCLENHWIC 189
           KF+  S+  WCL+NH  C
Sbjct: 139 KFSCCSFIAWCLDNHSDC 156


>02_05_0707 + 31096628-31096630,31097037-31097405,31097477-31101715
          Length = 1536

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +2

Query: 23   INLKCVIAWMLLINYKLLCPQFEAVAADAHRPVTPPEIVLRAAAEDLW 166
            INL C+  ++  ++  L  P    VAA A  P  PPE +LR   E  W
Sbjct: 1088 INLPCLSPFISPMSSGLPAPI--KVAATAKGPFVPPENLLRFQPETGW 1133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,712,143
Number of Sequences: 37544
Number of extensions: 253193
Number of successful extensions: 817
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)