Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18j13
(423 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 33 0.014
SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch... 29 0.30
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 0.39
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 28 0.52
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb... 28 0.69
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 27 1.6
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac... 26 2.8
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 25 3.7
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom... 25 3.7
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 3.7
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 25 4.8
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 24 8.5
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 33.5 bits (73), Expect = 0.014
Identities = 15/48 (31%), Positives = 33/48 (68%)
Frame = +1
Query: 250 AKEKELDSGTPENEKDATTEKEAIEISNEKEAGPVTNGESEQKAENGE 393
+++ E DS + E E++ +E+++ E+S+E E+ + ESE+++E+ E
Sbjct: 78 SEDSESDSESSEEEEETESEEDS-EVSDESESESESESESEEESESEE 124
>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 29.1 bits (62), Expect = 0.30
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 241 EQTAKEKELDSGTPENEKDATTEKEAIEISNEKEA 345
+QT KEK++DS + ENE ++ + E S + ++
Sbjct: 108 QQTEKEKDVDSASAENESINSSSSSSKECSTQTQS 142
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 28.7 bits (61), Expect = 0.39
Identities = 22/79 (27%), Positives = 34/79 (43%)
Frame = +1
Query: 178 VEQLADVDALKPQINGDAHIHEQTAKEKELDSGTPENEKDATTEKEAIEISNEKEAGPVT 357
V+ DA + DA E+ KE D G +DA+ + E+ E + G
Sbjct: 180 VDWAVSKDAFEATTLKDASSEEEN-KEFVSDEGHSIVTEDASADSESEEEVDGHSEGKEL 238
Query: 358 NGESEQKAENGESVTTTPD 414
GESE++ N + V + D
Sbjct: 239 AGESEEEGSNVDDVEDSGD 257
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 28.3 bits (60), Expect = 0.52
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Frame = +1
Query: 181 EQLADVDALKPQINGDAHIHEQ----TAKEKELDSGTPENEKDATTEKEAIEISNEKEAG 348
E++ D + P I D E AK E DS E D+T + + EK +
Sbjct: 162 EEVFDTEITNPVIPADEDDDEYQDLPAAKRHEGDS-IKSTEHDSTLDSGVVIDGREKSSS 220
Query: 349 PVTNGESEQKAENGESVTTTPDDGK 423
+ ESEQ AE G++ + D +
Sbjct: 221 ELHEEESEQAAE-GDTAKNSGTDAQ 244
>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 455
Score = 27.9 bits (59), Expect = 0.69
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = +1
Query: 181 EQLADVDALKPQINGDAHIHEQTAKEKELDSGTPENEKDATTEKEAIEISNEKEAGPVTN 360
EQ DV+ L ++ + T+KE D + EKE +E ++ E N
Sbjct: 6 EQTDDVETLMASLDQLGMEADPTSKEFNNDDSKIGAPSEVQDEKELLEFLDQLENDEEKN 65
Query: 361 GES--EQKAENGESVTTTPDD 417
++ E+ E ESV T ++
Sbjct: 66 EKNPIEEANEENESVAATSNE 86
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 26.6 bits (56), Expect = 1.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 217 INGDAHIHEQTAKEKELDSGTPENEKDATTEKEAIEISNEKEAGPVTN 360
+N DA++ EQ+ K E PE E++ K A NE V++
Sbjct: 297 VNSDANVVEQSEKTTEDADEEPETEENLDEFKPADGADNEDSKSLVSH 344
>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
Hba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 2.8
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +1
Query: 247 TAKEKELDSGTPENEKDATTEKEAIEISNEK-EAGPVTNGESEQKAENGESVTTT 408
+ KEKE D + EN + A N+K AG + E +G+S +T
Sbjct: 205 SGKEKENDKKSSENFDELLANTSAKAFENQKGSAGETKSEPKEADKGSGDSTKST 259
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 25.4 bits (53), Expect = 3.7
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +1
Query: 241 EQTAKEKELDSGTPENEKDATTEKEAIEISNEKEAGPVTNGESEQKA 381
E++ EKEL + + +D + EA++ +NE+ + + E A
Sbjct: 251 EESEPEKELKATFNQQNQDLYNQTEALKSTNEELINQIKSAEELDSA 297
>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 341
Score = 25.4 bits (53), Expect = 3.7
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +1
Query: 253 KEKELDSGTPENEKDATTEKEAIEISNEKEAGPVTNGESEQKAENGES 396
+++EL ENE + ++E + + ++NE+ N E+ GES
Sbjct: 4 RKEELSQTLYENESEQSSETKELMLNNEESLSDWRNYFDEKLTIPGES 51
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 25.4 bits (53), Expect = 3.7
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = +1
Query: 193 DVDALKPQINGDAHIHEQTAKEKELDSGTPENEKDATTEKE---AIEISNEKEAGPVTNG 363
DV++++ +G IH E+ +D+ E D++ + A SNE +
Sbjct: 319 DVESVRDPDDGTLPIHSTQTVEEPIDTKAGEKLTDSSKQPSPPVAEHFSNETFSASPKGA 378
Query: 364 ESEQKAENGES 396
E++ K+E +
Sbjct: 379 ETDVKSEGSNN 389
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 25.0 bits (52), Expect = 4.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 259 KELDSGTPENEKDATTEKEAIEISNEKEAGPVTNGESEQKAE 384
KE+D E+EK + ++ + K+ TNG QKAE
Sbjct: 124 KEIDG---EDEKKSVGQESITGSAKRKDRRSKTNGSKRQKAE 162
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 24.2 bits (50), Expect = 8.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 277 TPENEKDATTEKEAIEISNEKEAGPVTNGESEQKAENGESVT 402
T E EK+ E+E E+ NE++ E + ++E E T
Sbjct: 211 TREVEKEVPEEEETEEVKNEEDDKAPKIEEVDDESEKKEKKT 252
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.310 0.128 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,401,405
Number of Sequences: 5004
Number of extensions: 19434
Number of successful extensions: 74
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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