Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18j11
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    27   2.4  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    27   3.2  
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    26   4.2  
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce...    26   4.2  
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi...    26   4.2  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    26   5.6  
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom...    26   5.6  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.4  
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    25   9.7  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    25   9.7  
SPAC30C2.05 |erv14||cornichon family protein Erv14|Schizosacchar...    25   9.7  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    25   9.7  

>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 634 WCEYKKSCTKIMTYTWFELKKTLYLLTFYCVIL 536
           W EY +S + ++ Y W      L    F C++L
Sbjct: 239 WAEYFRSFSTLLPYLWPTKDYRLQFQIFICIVL 271


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 155 DTGDWVGETVEEAPWWTGWFGL 90
           D   +V  T E APW   WFG+
Sbjct: 695 DPSKFVDRTPENAPWKPYWFGI 716


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -1

Query: 308 NTH*FQNHLSLVSVMSSSNGFLRIVATDGNGVFVGWISSWCRSSLQITLQDDTG 147
           NT     H+   ++++ +N ++R V        +G I+SW  S LQI   D+ G
Sbjct: 516 NTPLVMQHID--NLVTQANIYIREVGQQPCSRLLGQIASWITSMLQIFGLDENG 567


>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -1

Query: 278 LVSVMSSSNGFL---RIVATDGNGVFVGWISSWCRSSLQIT 165
           L S M +S G      ++A  G G F  W++ W    +Q+T
Sbjct: 97  LCSSMPTSGGLYYAAAVLAPKGWGPFAAWLTGWSNYLVQVT 137


>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
           Php5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 24  PNQGSYQTGQGFTGKPLNEKYEEPE 98
           PN   YQT QG  G P+++++ + +
Sbjct: 380 PNAMMYQTQQGRQGNPMHQQFSQQQ 404


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = -2

Query: 643 YIKWCEYKKSCTKIMTYTWFELKKTLYLLTFYCVILFKFLLSFKIM 506
           Y+ +   K    ++    W E+  TLY+ T Y ++     L + +M
Sbjct: 588 YLDFINKKSKTERVYPKQWAEIDGTLYIRTMYGLLPLDDYLGWPVM 633


>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 179 SLQITLQDDTGDWVGETVEEAPWWTGWF 96
           SL +  +D T  W  +  + +P+W  WF
Sbjct: 230 SLLVQQEDGTFVWRTDLYKTSPYWMDWF 257


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 613 CTKIMTYTWFELKKTLYLLTFYCVILFKFLLS-FKIMMLSCRP 488
           C K++TY    ++  +Y+  F  V  FK  LS + ++ +S  P
Sbjct: 145 CRKVLTYKSLGIRTAVYVGAFCFVNCFKTRLSNWMLLPISANP 187


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = +3

Query: 99  PTGPPRGFFYSFTYPVSSIVLKSDLQGG---SAPTRYPA 206
           P+G P  F  +   PVSSI     L G    ++P  YPA
Sbjct: 120 PSGVPPAFARTLLPPVSSIASPDILSGAPGIASPLGYPA 158


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +3

Query: 6   NDGSYNPNQGSYQTGQGFTGKPLNEKYEEPEPTG 107
           NDG    N      G G    P    Y EP P G
Sbjct: 840 NDGGGTENHRDSTVGGGILKNPKAYPYREPTPPG 873


>SPAC30C2.05 |erv14||cornichon family protein
           Erv14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 141

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 601 MTYTWFELKKTLYLLTFYCVILFKFL 524
           + YT++ L     LL  +CVI+F  L
Sbjct: 12  LAYTFYRLNGANMLLQIFCVIMFSDL 37


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 206 RQRHHFRRWLQFLRNRLRKT 265
           RQ+ H R W+ FL + LR++
Sbjct: 315 RQKLHLRAWVSFLGSALRES 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,553,995
Number of Sequences: 5004
Number of extensions: 50658
Number of successful extensions: 117
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)