Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18j10
         (310 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0111 - 41137822-41138973,41139453-41139540,41139850-411399...    27   4.0  
05_06_0214 - 26425100-26425922,26426008-26426058,26426183-264262...    25   9.2  
03_05_0082 - 20595935-20596039,20596103-20596189,20596468-205965...    25   9.2  

>01_07_0111 -
           41137822-41138973,41139453-41139540,41139850-41139969,
           41140165-41140211,41140796-41141029,41141305-41141505,
           41141506-41143407,41144140-41145303,41145574-41145879
          Length = 1737

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 208 KSNVHRCRHAREFNTHNR 261
           K+N H CRHA+  N H R
Sbjct: 533 KANEHYCRHAQLVNYHKR 550


>05_06_0214 -
           26425100-26425922,26426008-26426058,26426183-26426256,
           26426344-26426441,26426547-26426671,26426724-26426957,
           26426992-26427037,26427101-26427152,26427331-26427367,
           26427521-26427637,26428287-26428352,26428439-26428518,
           26429102-26429311,26429650-26429739,26430093-26430182,
           26430280-26430411,26430876-26431094,26431203-26431286,
           26431543-26431656,26431857-26431914,26432535-26432602,
           26432847-26432962,26433495-26433574,26433839-26433912
          Length = 1045

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -3

Query: 239 LACRHRWT--FDFLLLDFNILKRTQ 171
           L+CRHRWT  F+  L D N    TQ
Sbjct: 667 LSCRHRWTGRFEAHLWDKNSWNPTQ 691


>03_05_0082 -
           20595935-20596039,20596103-20596189,20596468-20596586,
           20596686-20596924,20597044-20597100,20597203-20597909,
           20599827-20600192
          Length = 559

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 62  FAVAKVKIMKTILSTMLSLVLIIC 133
           F+V  V ++   LS ++SLV+++C
Sbjct: 394 FSVVVVTVLSFFLSVVISLVILLC 417


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,313,254
Number of Sequences: 37544
Number of extensions: 127875
Number of successful extensions: 268
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)