Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18j10
         (310 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    25   0.28 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   1.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   5.9  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    20   7.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   7.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   7.8  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 24.6 bits (51), Expect = 0.28
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 156 GDCSVLGSF*NVKIEKQEIKCPPMSTCKRI*YTQSYMYMIT 278
           G  S++G+F N  +    +   P  TCK +     Y+Y I+
Sbjct: 291 GVMSMIGAFGNKALLTPGVTMIPACTCKAVACLDPYVYAIS 331


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 7   LSNFKCTQTKMLFNILFSFCSCESKNNENNIVNDA 111
           L+ F     K    I F +    SKN+EN+I+  A
Sbjct: 603 LALFATKDIKQNEEITFDYMCQSSKNSENSIMQRA 637


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 251 VLNSLACRHRWTFDFLLLDFNILKRTQHTAVTSSVPAI 138
           VL   AC    T+  ++ +F+I +       T  +PA+
Sbjct: 227 VLKMYACCPNDTYPMIVYEFSISRHYGILHATYVIPAV 264


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -2

Query: 189 HFKKNPAHCSH 157
           H  + P HCSH
Sbjct: 32  HTGEKPYHCSH 42


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 31  TKMLFNILFSFCSCESKNNENNIVNDAFPSSDHLFG 138
           T  L  ++ S  S  S + ENN    +  SS H  G
Sbjct: 372 TPELLGLMPSGSSVHSDSGENNSRGHSGQSSSHHHG 407


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 236 QENLIHTIVYVHDNNY 283
           QE LIH +VY   N Y
Sbjct: 335 QEELIHRLVY-FQNEY 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,545
Number of Sequences: 438
Number of extensions: 1463
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)