Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18j08
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ...    28   1.0  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    28   1.3  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    27   3.1  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.1  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    26   4.1  
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    26   4.1  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    25   7.1  

>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -2

Query: 622 RKEPWQNFHNYYVLCPLIDQKSFLGVSKDKEDANVLVTLGRNVVNKYRVS 473
           +KE WQ   N Y+L   ID+   +  +K + + N+L T   N+V    VS
Sbjct: 2   KKENWQKIENVYLLGKKIDKAKRM-ANKGESNTNMLST-EENIVKAKAVS 49


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 172 SKNENIVKLFNLTLNFFDLSKLAE 243
           S +EN+++LFN   NFF+L+ L +
Sbjct: 599 SHDENLIQLFNDESNFFNLNDLGD 622


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = -2

Query: 574 LIDQKSFLGVSKDKEDANVLVTLGRNVVNKYRVSNSHSYKALLLSF 437
           ++D  + +      EDA ++  LG NV+  Y V+ S ++   + +F
Sbjct: 57  IVDPLAEVNYKNCTEDAKIISNLGANVIRVYAVNASLNHDKCMEAF 102


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 290 NYHLCHHRSQLKLYDLSMSNLRLVSGLKAK 379
           N+ L  H SQL L+D++   ++ V  LK K
Sbjct: 327 NFLLIQHDSQLSLWDITFGTIQDVYDLKQK 356


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -1

Query: 338 KDHITSAVIYDDTNGNYIGVFNNNIIKTWQEDSAN--LDKSKKFKV 207
           K H+ S V ++D+N   I  F+       +E  AN  L+KS K +V
Sbjct: 13  KTHVESIVKFEDSNRGTITDFHIETANNEEEKDANVILNKSVKMEV 58


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 91  NILSIVTFSTSSPK-KRKKEKGDLNPNYSKNENIVKLFNLTLNFFDLSKLAESSCHV 258
           +I+ ++ FS      KR    G L  NY K     + +N+    + ++++ ES C+V
Sbjct: 169 HIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNMMEETYIVNEIKESVCYV 225


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 326 LYDLSMSNLRLVSGLKAKLFVNFTIV*PKNIYF 424
           +Y+  +   R+ + LK+KLF+ F  +  KN+Y+
Sbjct: 278 VYEKIVFPSRIAAVLKSKLFLIFLFLKNKNVYY 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,480,109
Number of Sequences: 5004
Number of extensions: 47773
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)