Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18j08
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0906 - 7124686-7124730,7124854-7124925,7125257-7125383,712...    30   1.4  
03_02_0901 + 12267042-12267182,12267949-12268095,12268163-122682...    30   1.8  
05_03_0146 + 8883761-8883860,8886000-8886086,8886574-8886684,888...    28   5.6  
11_06_0452 + 23774378-23775054,23775228-23775411,23775911-237759...    28   7.4  
05_03_0041 - 7662094-7662138,7662269-7662340,7663144-7663179,766...    28   7.4  
06_01_0754 - 5644310-5646292                                           27   9.7  

>01_01_0906 -
           7124686-7124730,7124854-7124925,7125257-7125383,
           7125424-7125572,7126126-7126465,7126759-7127090,
           7127327-7127860
          Length = 532

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = +2

Query: 278 RPLCNYHLCHHRSQLKLYDLSMSNLRLVSGLKA--KLFVNFTI 400
           +PL NY+   +R QLKL+   +   +L+SG+++  KL+   TI
Sbjct: 395 QPLTNYNQDAYRLQLKLFLYEVKQQQLLSGIRSYLKLYSTITI 437


>03_02_0901 +
           12267042-12267182,12267949-12268095,12268163-12268253,
           12268367-12268485,12268779-12268969,12269440-12269650,
           12270072-12270309,12270944-12271329,12271933-12271956,
           12271984-12272077,12272341-12272525,12273025-12273255,
           12273665-12273730,12273816-12274034,12274764-12275003,
           12275244-12275423,12276269-12276535,12276612-12276815,
           12276896-12277048
          Length = 1128

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -2

Query: 607 QNFHNYYVLCPLIDQKSFLGVSKDKEDANVLVTL-GRNVVNKYRV-SNSHSY 458
           Q+F N +   P    +   G   D+ DAN+L    G N+ N   + SN HSY
Sbjct: 406 QSFINLFGRKPAAQSEDISGNQNDQGDANILEEADGNNICNANTLESNDHSY 457


>05_03_0146 +
           8883761-8883860,8886000-8886086,8886574-8886684,
           8887021-8887121,8887208-8887258,8887347-8887496,
           8887577-8887639,8887728-8887814,8887908-8888018,
           8888097-8888387,8889372-8889815
          Length = 531

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -1

Query: 359 QVGGWTSKDHITSAVIYDDTNGNYIGVFNNNIIKTWQEDSANLDKSKKFKVRLNNF 192
           Q  G+  +   T+  IY +    +  ++NNN + TW E S+  D  + ++ + N+F
Sbjct: 167 QQDGFYQQQISTTERIYQE----FDAIYNNNNMTTWSERSSERDIKELYESKNNHF 218


>11_06_0452 +
           23774378-23775054,23775228-23775411,23775911-23775996,
           23776116-23777010
          Length = 613

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
 Frame = -1

Query: 344 TSKDHITSAVI---YDDTNGNYIGV 279
           TS DH+ +  I   Y+D+NGN++G+
Sbjct: 215 TSADHVLNMTICKLYEDSNGNFLGL 239


>05_03_0041 -
           7662094-7662138,7662269-7662340,7663144-7663179,
           7663356-7663449,7663533-7663681,7664525-7664864,
           7666417-7666748,7667348-7667821
          Length = 513

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +2

Query: 281 PLCNYHLCHHRSQLKLYDLSMSNLRLVSGLKA--KLFVNFTI 400
           P  NY+   +R QLKL+   +   +L+SG+++  KL+   TI
Sbjct: 376 PYTNYNQDAYRLQLKLFLYEVKQQQLLSGIRSYLKLYSTITI 417


>06_01_0754 - 5644310-5646292
          Length = 660

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -1

Query: 308 DDTNGNYIGVFNNNIIKTWQEDSANL--DKSKKFKVRLNN 195
           +DTNGN++GV  N+++    E  A    D S K  V+L +
Sbjct: 117 NDTNGNHVGVDVNSLVSVVSEPVAYYAGDGSTKVPVQLES 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,869,499
Number of Sequences: 37544
Number of extensions: 232184
Number of successful extensions: 615
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)