Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18j08
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006663-5|AAY43999.1|  490|Caenorhabditis elegans Hypothetical ...    32   0.40 
Z70780-10|CAA94827.1|  330|Caenorhabditis elegans Hypothetical p...    28   6.6  
AF125971-2|AAN73291.1|  458|Caenorhabditis elegans Hypothetical ...    28   6.6  
Z98877-8|CAB63404.3|  475|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AC006663-5|AAY43999.1|  490|Caenorhabditis elegans Hypothetical
           protein H24K24.2 protein.
          Length = 490

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = +2

Query: 296 HLCHHRSQLKLYDLSMSNLRLVSGLKAKLFVNFTIV*PKNI 418
           HLC   S L++ D+S +N+R +SG+  K+ VN  I+  +N+
Sbjct: 143 HLCIGFSNLRVLDISNTNIRNLSGM--KMLVNLQILSMRNL 181


>Z70780-10|CAA94827.1|  330|Caenorhabditis elegans Hypothetical
           protein F46B6.11 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 201 KQFHYIFVFRIIRIKITFLFFSFLW 127
           K+FH +  F I+RI +T LF S+ +
Sbjct: 78  KEFHVLMDFLIVRIPLTSLFTSYCY 102


>AF125971-2|AAN73291.1|  458|Caenorhabditis elegans Hypothetical
           protein Y4C6B.4a protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +1

Query: 91  NILSIVTFSTSSPKKRKKEKGDLNPNYSKNENIVKL 198
           NILS + F T  P K  ++  D    YSKNE++VK+
Sbjct: 426 NILSFIFF-TDKPAKWTED--DAAVKYSKNEDVVKI 458


>Z98877-8|CAB63404.3|  475|Caenorhabditis elegans Hypothetical
           protein Y69H2.7 protein.
          Length = 475

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +1

Query: 118 TSSPKKRKKEKGDLNPNYSKNENIVKLFNLTLNFFDLSKLAESS 249
           +  P+K  K+K +     + N+N +++ N+ L+  DL  +   S
Sbjct: 2   SKKPEKNLKKKAEAASEITFNDNFIQIGNVKLSNIDLRSIVRKS 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,444,868
Number of Sequences: 27780
Number of extensions: 255865
Number of successful extensions: 727
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)