Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18j07
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr...    28   0.71 
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    27   1.2  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    26   2.2  
SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ...    26   2.2  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    26   2.9  
SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb...    26   2.9  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   3.8  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   6.7  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    24   8.8  

>SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 27.9 bits (59), Expect = 0.71
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 16  FELNHCHSKWKNKQENANLNYKY 84
           F +  CH  W+   E ++L+Y+Y
Sbjct: 94  FIIKDCHQDWETSDEKSSLSYEY 116


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 337 MCFARPFLLPRFLCYDFL-IAFFCEVVDAVM 248
           +CF  P  L  F+CY F  +  F  V DA++
Sbjct: 203 ICFGAPLFLVIFICYIFFTVLSFFNVPDAIV 233


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 173 SYRTKDEYDCYVEGYVKCFWSLCDRHNSIDNF 268
           S R K   DCY++ Y +    L +  N+ D F
Sbjct: 874 SLRRKFNIDCYLKRYERALGHLKEMENAFDEF 905


>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 200 CYVEGYVKCFWSLCDRHNSIDN 265
           C+++GYV+ FW   + H    N
Sbjct: 32  CFIKGYVRRFWMRSEDHRGTVN 53


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -1

Query: 355 YYFKVPMCFARPFLLPR-FLCYDFLIAFFC-EVVDAVMSVTETPKTFNVAFHITIVFVFS 182
           YY  + +C  RPFL  +     D      C + ++ +++V    +T N   + T+  V++
Sbjct: 485 YYHLIRICLNRPFLSRKEVTANDLTPKTICTDSINEIVTVIRAHRTANGLRYSTLYIVYA 544

Query: 181 SI 176
           +I
Sbjct: 545 AI 546


>SPAC607.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 231

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = +2

Query: 251 NSIDNFTEKRNEKIIT--KEPRKQEW 322
           + ID FT+K+ +K I   KE R+++W
Sbjct: 99  SKIDEFTDKKEKKKIAKRKEKRERDW 124


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 331 FARPFLLPRFLCYDFLIAFFCEVVDAVMSVTETPKTFNVAFHITIVFV 188
           F  PF  P FLCYD L+    E +    S T T   F+   +  ++FV
Sbjct: 575 FNVPF--PVFLCYDILV----ETILPAGSQTLTDSVFSSKLYKLVIFV 616


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 376 RPFLF*KYYFKVPMCFARPFLLPRFLCYDFLIAFFCE 266
           RP+L   Y+    +CF +P ++   + +  LI FF +
Sbjct: 720 RPYLCSIYWAGSRLCFVQPRIILGIMYFTDLILFFLD 756


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = -1

Query: 355 YYFKVPMCFARPFLLPRFL-CYDFLIAFFCEVVDAVMSVTETPKTF--NVAFHIT-IVFV 188
           Y+F + +C  RPFL  + L   D      C  +D++  V    + +  N+  H T ++ V
Sbjct: 456 YFFLIRLCLNRPFLSKKGLYVNDMTPRNIC--IDSIEDVKVLIRAYRENLGLHHTPLIIV 513

Query: 187 FSSIRPKST 161
           ++ I   ST
Sbjct: 514 YACIVSCST 522


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,688,426
Number of Sequences: 5004
Number of extensions: 32596
Number of successful extensions: 79
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)