Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18j07
         (436 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0318 - 21999640-21999705,21999706-21999768,21999822-219998...    29   1.2  
02_03_0204 - 16369800-16371758,16372260-16372331                       29   2.2  
03_02_0232 + 6614784-6614882,6616145-6616477,6616708-6616967,661...    28   2.9  
02_02_0666 - 12757555-12757688,12757968-12758029,12758156-127582...    27   6.6  
10_02_0024 - 4314090-4314269,4314387-4314458,4315093-4315227,431...    27   8.7  

>02_04_0318 -
           21999640-21999705,21999706-21999768,21999822-21999884,
           21999938-22000000,22001097-22001141,22001914-22002325,
           22003313-22003475,22004086-22004132,22004458-22004564,
           22004651-22004684,22004754-22004807,22005599-22005723
          Length = 413

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 355 YYFKVPMCF-ARPFLLPRFLCYDFLIAFFCEVVDAVMSVTE 236
           YYF  P+ + A    LP + CY FL    C+V    +S+TE
Sbjct: 362 YYFLNPLPYQAIRLFLPSWHCYYFLNPLPCQVCTTELSLTE 402


>02_03_0204 - 16369800-16371758,16372260-16372331
          Length = 676

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -1

Query: 253 VMSVTETPKTFNVAFHITIVFVFSSIRPKSTNYRFKVVI 137
           ++S T  P   N+++H+ +  ++ S+ PK  N R K ++
Sbjct: 92  MISTTLEPSYNNLSYHLKLCLLYLSVFPKGHNIRRKRIV 130


>03_02_0232 +
           6614784-6614882,6616145-6616477,6616708-6616967,
           6617328-6617469,6617567-6617938,6618056-6618187,
           6618907-6619035,6619125-6621188
          Length = 1176

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 245 RHNSIDNFTEKRNEKIITKEPRKQEWPCKTHRDFK 349
           R N I  F E +  K + +EPR   W C    DF+
Sbjct: 242 RRNVIREFKELKELKRMRREPRCTSWFCVADTDFQ 276


>02_02_0666 -
           12757555-12757688,12757968-12758029,12758156-12758223,
           12758359-12758490,12759116-12759351,12759451-12759648,
           12760123-12760213,12760566-12760710,12760837-12760955
          Length = 394

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/47 (23%), Positives = 19/47 (40%)
 Frame = +2

Query: 215 YVKCFWSLCDRHNSIDNFTEKRNEKIITKEPRKQEWPCKTHRDFKII 355
           Y  C  ++    N +  F  K +   + K      WPC++   FK +
Sbjct: 326 YSTCSLTVAQNENVVQQFLCKHSSAELQKIDSADSWPCRSGSIFKTL 372


>10_02_0024 -
           4314090-4314269,4314387-4314458,4315093-4315227,
           4315290-4315383,4315797-4315855,4315944-4315980,
           4316105-4316292,4316426-4316666,4316668-4316702,
           4316761-4316949,4317069-4317217,4317340-4317685
          Length = 574

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 212 GYVKCFWSLCDRHN 253
           GYV C WS+C  H+
Sbjct: 501 GYVGCMWSICGLHD 514


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,564,913
Number of Sequences: 37544
Number of extensions: 165389
Number of successful extensions: 343
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)