Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18j07
         (436 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF162674-1|AAF80462.1|  575|Caenorhabditis elegans CNT-like nucl...    27   4.4  
AF016413-4|AAM29683.1|  454|Caenorhabditis elegans Hypothetical ...    27   4.4  
AF016413-3|AAB65256.3|  555|Caenorhabditis elegans Hypothetical ...    27   4.4  
AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical...    27   4.4  
AC024200-9|AAF36012.1|  425|Caenorhabditis elegans Arp2/3 comple...    27   5.9  
Z99281-50|CAD56259.3|  837|Caenorhabditis elegans Hypothetical p...    27   7.8  
AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine re...    27   7.8  

>AF162674-1|AAF80462.1|  575|Caenorhabditis elegans CNT-like
           nucleoside transporter protein.
          Length = 575

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -1

Query: 286 LIAFFCEVVDAVMSVTETPKTFNVAFHITIVFVFSSIRPKSTNYRFKVVITLRFC 122
           L+AF   ++D++  +T     F   F+I  +FVFS+ R K         + + +C
Sbjct: 132 LLAF--TIIDSIHDLTRLTGFFAYVFYILFMFVFSNNRMKINWSVVSSALIMHYC 184


>AF016413-4|AAM29683.1|  454|Caenorhabditis elegans Hypothetical
           protein F27E11.2b protein.
          Length = 454

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -1

Query: 286 LIAFFCEVVDAVMSVTETPKTFNVAFHITIVFVFSSIRPKSTNYRFKVVITLRFC 122
           L+AF   ++D++  +T     F   F+I  +FVFS+ R K         + + +C
Sbjct: 132 LLAF--TIIDSIHDLTRLTGFFAYVFYILFMFVFSNNRMKINWSVVSSALIMHYC 184


>AF016413-3|AAB65256.3|  555|Caenorhabditis elegans Hypothetical
           protein F27E11.2a protein.
          Length = 555

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -1

Query: 286 LIAFFCEVVDAVMSVTETPKTFNVAFHITIVFVFSSIRPKSTNYRFKVVITLRFC 122
           L+AF   ++D++  +T     F   F+I  +FVFS+ R K         + + +C
Sbjct: 132 LLAF--TIIDSIHDLTRLTGFFAYVFYILFMFVFSNNRMKINWSVVSSALIMHYC 184


>AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.1 protein.
          Length = 751

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 248 HNSIDNFTEKRNEKIITKEPRKQEWPCKTHRD 343
           H  IDN  EK  +   T+E R+ +W  K   D
Sbjct: 304 HAFIDNLWEKFRQNSQTREERENQWATKNCND 335


>AC024200-9|AAF36012.1|  425|Caenorhabditis elegans Arp2/3 complex
           component protein 1 protein.
          Length = 425

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -1

Query: 346 KVPMCFARPFLLPRFLCYDFLIAFFCEVVDAVMSVTETPKTFNVAF 209
           K   C+  P ++  F+ YD   A +    D + S+T+ P   +V +
Sbjct: 235 KEKFCYVCPDVMKEFVKYDTDAAKWLRTYDGINSITKKPFNVDVGY 280


>Z99281-50|CAD56259.3|  837|Caenorhabditis elegans Hypothetical
           protein Y57G11C.37 protein.
          Length = 837

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 74  IISTLCNFKILF--LIMFTKSQCNHYFKPIVRRLGSYRTKDEYDCYV 208
           ++S LC F ++F  L++    +       I+  L +YRT DEY+ ++
Sbjct: 389 MLSWLCYFPMIFYALMIVISDKIYRRLALILNDLENYRTDDEYEDFL 435


>AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 65 protein.
          Length = 316

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = -1

Query: 358 KYYFKVPMCFARPFLLPRFLCYDFLIAFFCEVVDAVMSVTETPKTFNVAFHITIVF 191
           KYY    + FA    LP F   DF I    E+ +  +     P+    A ++T +F
Sbjct: 139 KYYLHCGLAFALYSFLPTFFWLDFAIK--VEIQNETLVTIVYPEVLAKANNVTAIF 192


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,265,970
Number of Sequences: 27780
Number of extensions: 180324
Number of successful extensions: 521
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)