Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18j05
         (309 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0643 + 19541991-19542188,19543261-19543515,19543598-195437...    27   2.3  
02_02_0368 + 9501965-9501983,9502189-9502257,9502902-9503257,950...    27   2.3  
07_03_0244 - 15715047-15715163,15716672-15716824,15718629-157187...    27   3.0  
12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927     26   6.9  
05_07_0184 - 28253448-28253743,28253835-28254102,28254439-28255869     26   6.9  
04_03_0742 + 19200045-19200053,19200158-19200437,19201331-192015...    26   6.9  
08_02_0584 - 19010345-19010656,19010959-19011018                       25   9.2  
03_06_0670 + 35434203-35434355,35436601-35436729,35436978-354384...    25   9.2  

>10_08_0643 +
           19541991-19542188,19543261-19543515,19543598-19543722,
           19543815-19543859,19544618-19544699,19545099-19545167,
           19545276-19545446,19545530-19545595,19546236-19546273,
           19547478-19547759,19548286-19548419,19548887-19548981,
           19549083-19549127,19549250-19549309,19549483-19549584,
           19549852-19549903,19549982-19550034,19550138-19550202,
           19550579-19550630,19550780-19550857
          Length = 688

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 284 SCAGRSFFGLVSVFCLVSSNFLANSSAVANF-FTAFDF 174
           S  G +F   V+ FC  +S   ANS    +F F AFDF
Sbjct: 336 SMVGPNFSDEVAAFCGRTSTTAANSDGKGDFSFEAFDF 373


>02_02_0368 +
           9501965-9501983,9502189-9502257,9502902-9503257,
           9503354-9503514,9503872-9504032,9504094-9504275
          Length = 315

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -2

Query: 302 FPASSPSCAGRSFFGLVSVFCLVSSNFLANSSAVAN 195
           FPA  PS +G S F L    CL  S+ L +++AV++
Sbjct: 23  FPA--PSTSGNSKFPLFKTSCLAMSHGLVSNTAVSS 56


>07_03_0244 -
           15715047-15715163,15716672-15716824,15718629-15718748,
           15718830-15719045,15719902-15719968,15720051-15720125,
           15720607-15720698,15721053-15721154,15721642-15721711,
           15721788-15721846,15721947-15722031,15722443-15722520,
           15722627-15722725,15722819-15722910,15725572-15725661,
           15725937-15725995,15727966-15728281,15728627-15728702,
           15729998-15730308,15730577-15730634,15731082-15731092,
           15731247-15731397,15733372-15733778
          Length = 967

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/15 (80%), Positives = 13/15 (86%), Gaps = 1/15 (6%)
 Frame = -3

Query: 301 SPPPRHP-APVALSS 260
           SPPPRHP APVA S+
Sbjct: 36  SPPPRHPLAPVAASA 50


>12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927
          Length = 229

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +3

Query: 261 EERATGAGWRGGGE 302
           E RA   GWRGGGE
Sbjct: 22  ELRAEDGGWRGGGE 35


>05_07_0184 - 28253448-28253743,28253835-28254102,28254439-28255869
          Length = 664

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -2

Query: 299 PASSPSCAGRSFFGLVSVFC 240
           P S  S A RSF GLVS  C
Sbjct: 311 PKSMSSIATRSFLGLVSFLC 330


>04_03_0742 +
           19200045-19200053,19200158-19200437,19201331-19201545,
           19201705-19201792,19202277-19202842
          Length = 385

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
 Frame = +1

Query: 211 ELAKKLEDTKQKTETRPKK-------ERPAQDGEEAGKTG 309
           E AK  E+ K K E +PK+       E+P ++GE+ GK G
Sbjct: 8   EAAKAKEEEKPKQEEKPKEQEEGKKEEKPKEEGEK-GKDG 46


>08_02_0584 - 19010345-19010656,19010959-19011018
          Length = 123

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 211 ELAKKLEDTKQKTETRPKKERPAQDGEEAGK 303
           E  K  E  K+    + KKE+  ++GEEA K
Sbjct: 15  EEKKDKEHAKEAKPEKEKKEKKEKNGEEAAK 45


>03_06_0670 +
           35434203-35434355,35436601-35436729,35436978-35438409,
           35438524-35439014
          Length = 734

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 222 KIRRHQTENRN*AEERATGAGWRGGG 299
           ++ RHQ E R  A  RA G G  GGG
Sbjct: 11  RLLRHQEEGRRTARARARGGG--GGG 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,630,603
Number of Sequences: 37544
Number of extensions: 100343
Number of successful extensions: 408
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)