Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18j04
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    54   2e-09
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    43   2e-06
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    43   3e-06
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    38   6e-05
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                35   6e-04
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    31   0.007
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    31   0.007
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.63 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.6  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   2.6  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   2.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.4  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   4.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   7.8  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 53.6 bits (123), Expect = 2e-09
 Identities = 30/125 (24%), Positives = 61/125 (48%), Gaps = 1/125 (0%)
 Frame = +3

Query: 279 TIGSGSYATVKVAS-SDRHNCQVAIKIISKFQAPGDYLKKFLPREIEVVKGLKHENLIRF 455
           T+G G +  V++   +   +   A+K + K Q      ++ +  E  ++     + +++ 
Sbjct: 372 TLGVGGFGRVELVQIAGDSSRSFALKQMKKAQIVETRQQQHIMSEKRIMGEADCDFVVKL 431

Query: 456 LQAIETTHRVYIVMEYAENGSLLDIIRKDQHIDETRGRRWFKQLVEAVDYCHERGVVHRD 635
            +  +    +Y++ME    G L  ++R   H D+   R +   +VEA DY H R +++RD
Sbjct: 432 FKTFKDRKYLYMLMEACLGGELWTVLRDKGHFDDGTTRFYTACVVEAFDYLHSRNIIYRD 491

Query: 636 IKCEN 650
           +K EN
Sbjct: 492 LKPEN 496


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 43.2 bits (97), Expect = 2e-06
 Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 8/138 (5%)
 Frame = +3

Query: 261  GYM-LGRTIGSGSYATV-----KVASSDRHNCQVAIKIISKFQAPGDYLKKFLPREIEVV 422
            GY+ +   IG G +  V     K+    R    VAIK +    A  D  +     E  ++
Sbjct: 631  GYITIEAIIGGGEFGDVCRGKLKLPPDGRTEIDVAIKTLKPGSA--DKARNDFLTEASIM 688

Query: 423  KGLKHENLIRFLQAIET-THRVYIVMEYAENGSLLDIIR-KDQHIDETRGRRWFKQLVEA 596
               +H N+I FLQ + T ++ V I+ E+ ENGSL   +R  D      +     + +   
Sbjct: 689  GQFEHPNVI-FLQGVVTKSNPVMIITEFMENGSLDTFLRANDGKFQVLQLVGMLRGIASG 747

Query: 597  VDYCHERGVVHRDIKCEN 650
            + Y  E   VHRD+   N
Sbjct: 748  MQYLAEMNYVHRDLAARN 765


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 42.7 bits (96), Expect = 3e-06
 Identities = 20/69 (28%), Positives = 36/69 (52%)
 Frame = +3

Query: 444 LIRFLQAIETTHRVYIVMEYAENGSLLDIIRKDQHIDETRGRRWFKQLVEAVDYCHERGV 623
           L++     +T  R+Y VMEY   G L+  I++     E     +  ++   + + H RG+
Sbjct: 47  LVQLHSCFQTMDRLYFVMEYVNGGDLMYQIQQCGKFKEPVAVFYASEIAIGLFFLHGRGI 106

Query: 624 VHRDIKCEN 650
           V+RD+K +N
Sbjct: 107 VYRDLKLDN 115


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 38.3 bits (85), Expect = 6e-05
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = +3

Query: 579 KQLVEAVDYCHERGVVHRDIKCEN 650
           +Q++E+V +CH  GVVHRD+K EN
Sbjct: 16  QQILESVHHCHHNGVVHRDLKPEN 39


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 35.1 bits (77), Expect = 6e-04
 Identities = 34/126 (26%), Positives = 52/126 (41%)
 Frame = +3

Query: 273 GRTIGSGSYATVKVASSDRHNCQVAIKIISKFQAPGDYLKKFLPREIEVVKGLKHENLIR 452
           G  +GSG +  V  A       QVA KII       +     L  E +    LKH N+++
Sbjct: 70  GTFLGSGGFGIVYKALYKGE--QVAAKIIQT-----EKYSNMLNSE-KHASFLKHSNIVK 121

Query: 453 FLQAIETTHRVYIVMEYAENGSLLDIIRKDQHIDETRGRRWFKQLVEAVDYCHERGVVHR 632
            L   +      I ME    G+ L     +  + +       K +  A+ +CH  G+VH 
Sbjct: 122 VLMIEQGASLSLITMELC--GTTLQNRLDEAILIKNERICILKSITCALQFCHNAGIVHA 179

Query: 633 DIKCEN 650
           D+K +N
Sbjct: 180 DVKPKN 185


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 31.5 bits (68), Expect = 0.007
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
 Frame = +3

Query: 525 DIIRKDQHIDETRGRRWFKQL------VEAVDYCHERGVVHRDIKCEN 650
           D + +D +     G  W +++      +E + Y H +G+VHRD+K +N
Sbjct: 680 DRLSRDLYCGIRAGLSWLERIQIALDVLEGIRYLHSQGLVHRDVKLKN 727


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 31.5 bits (68), Expect = 0.007
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
 Frame = +3

Query: 525 DIIRKDQHIDETRGRRWFKQL------VEAVDYCHERGVVHRDIKCEN 650
           D + +D +     G  W +++      +E + Y H +G+VHRD+K +N
Sbjct: 718 DRLSRDLYCGIRAGLSWLERIQIALDVLEGIRYLHSQGLVHRDVKLKN 765


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 172 SARCQQSLRLRYIAVWKPKLKGN*RFLKATVTCLA 276
           S RC  +  LR+  +W+  L    R L AT  C A
Sbjct: 20  SVRCSAASGLRWFEIWRDSLPTKMRELNAT-ACAA 53


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 267 MLGRTIGSGSYATVKVASSDRHN 335
           MLG   G GS  T+ + + DR+N
Sbjct: 130 MLGSLFGCGSIWTMTMIAFDRYN 152


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 267 MLGRTIGSGSYATVKVASSDRHN 335
           MLG   G GS  T+ + + DR+N
Sbjct: 96  MLGSLFGCGSIWTMTMIAFDRYN 118


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 267 MLGRTIGSGSYATVKVASSDRHN 335
           MLG   G GS  T+ + + DR+N
Sbjct: 6   MLGSLFGCGSIWTMTMIAFDRYN 28


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +3

Query: 333 NCQVAIKIISKFQAPGDYLKKFLP 404
           +C   ++   K    GDY++++LP
Sbjct: 428 HCYCPVRFGRKADPNGDYIRRYLP 451


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 17  LSQNDIMKENPKKKLKFKYVNI 82
           LS N I   N  KKL +  +NI
Sbjct: 318 LSNNTIHNNNYNKKLYYNIINI 339


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -2

Query: 359 DYFNSNLTIMSVARGHLNSCIGTGPNCSAKHVTVAF 252
           D  N+ +   + +    NSC+G+     +KH T  F
Sbjct: 360 DSMNAVIRNFNESENRRNSCLGSTETYYSKHNTQQF 395


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 144 PDVRTHDNVLGEMSAEPTATVHSGVEAKTERKLTVLESHGYML 272
           P +   DNV+   S      + S   A++E+ L   E+H + L
Sbjct: 704 PRIMDLDNVMCRTSGPRGVAIVSASTARSEQFLCRYEAHCFAL 746


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 527 HYTKRSAHR*DPW 565
           HY K S H+  PW
Sbjct: 323 HYRKPSTHKMAPW 335


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,486
Number of Sequences: 438
Number of extensions: 3313
Number of successful extensions: 19
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)