Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18j02
         (330 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0275 - 21469391-21470650                                         29   1.2  
02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875           28   2.0  
04_04_0020 + 22182649-22182829,22183900-22183999,22184415-221844...    27   2.7  
04_04_0895 - 29168107-29168229,29168617-29170068                       27   4.7  

>02_04_0275 - 21469391-21470650
          Length = 419

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 205 RAARRYVKFGNISTRVSSMTTISVKCNSDVLCK*KISVIKKK 330
           R + R+ ++  ++  VSS    S +  SDV CK +I  +KKK
Sbjct: 85  RGSLRHPQWQEVAEVVSSRDGYSKQPKSDVQCKNRIDTLKKK 126


>02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875
          Length = 356

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 219 SSCSTCKW*CTESRGRSMGRSKNRR 145
           +SC  CK  C  S GRS  R++ RR
Sbjct: 252 TSCIFCKSFCRSSGGRSRARARERR 276


>04_04_0020 +
           22182649-22182829,22183900-22183999,22184415-22184491,
           22184718-22184809,22188655-22189767
          Length = 520

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 205 RAARRYVKFGNISTRVSSMTTISVKCNSDVLCK*KISVIKKK 330
           R + R+ ++  ++  VSS    +    SDV CK +I  +KKK
Sbjct: 192 RGSLRHPQWQEVADAVSSREGYAKAPKSDVQCKNRIDTLKKK 233


>04_04_0895 - 29168107-29168229,29168617-29170068
          Length = 524

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 285 IALNTDGCHRRHPRRYVSEFNISSC 211
           +A   DGC RR+P  Y S+  I +C
Sbjct: 254 LARMQDGCIRRYPALYGSDDRIQAC 278


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,627,480
Number of Sequences: 37544
Number of extensions: 68693
Number of successful extensions: 142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)