Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18j01
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 28 1.1
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 3.4
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 27 3.4
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam... 26 4.4
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 26 4.4
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 26 4.4
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch... 26 5.9
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 26 5.9
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.9
SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyc... 25 7.8
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 7.8
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 25 7.8
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/64 (23%), Positives = 29/64 (45%)
Frame = +1
Query: 106 CITMVHDSIQYTKSIENMVIDYEDDKNSMIALAEQENIHFYDDFYDEMDSRIKMENSMNM 285
C+ S T ++ +M + EDD ++ + I Y D+ +E + NS++
Sbjct: 1024 CLNSFKTSASATTNVTDMQLLNEDDVALLMTGSSDGTIKLYRDYENEKVELVTSWNSLSD 1083
Query: 286 IFFG 297
+ FG
Sbjct: 1084 LVFG 1087
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = -2
Query: 315 HERAYGSKENHIHGILHFDSTVHFIVKVVIKMYIFLFCKSDHRVLIVFIVDHHIFN 148
++R +N + F T+ ++ I +++F FC H IV ++ IFN
Sbjct: 371 YKRDKRKHQNRLRPEARFIMTLFYVWGFPIGIFMFAFCSKVHIHYIVSLIGLTIFN 426
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 151 ENMVIDYEDDKNSMIALAEQENIHFYDDFYDEMDS 255
+ VIDY D+ I ++ NIH D Y ++ S
Sbjct: 687 QKTVIDYAADRGPFIDQSQSLNIHLKDPSYGKITS 721
>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 136 YTKSIENMVIDYEDDKNSMIALAEQENIHF 225
Y IEN +ID +N+ L +QEN+ F
Sbjct: 499 YLCPIENSLIDLFGSENNKEKLGKQENVRF 528
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -3
Query: 521 YAPGNRILSIPVRLCNHYPHTTCRHSNVCMKPQVYR 414
Y PGN I + V C H H C N + +YR
Sbjct: 1414 YPPGNNIRGVFVSGCGHLMHLGC-FKNYYVARSMYR 1448
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 26.2 bits (55), Expect = 4.4
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -2
Query: 363 FFSESQNVQQTFSIYSHERAYGSKENHIHGILHFDSTVHFIVKVVIKMYIFLFCKS 196
+F+ S+ + Q ++I A GSK GI+H D F+ VIK F KS
Sbjct: 326 YFTASEKIVQAWTI-----ADGSKAPDAAGIIHSDFKKKFVAGEVIKFSDFEKYKS 376
>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 577
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 555 FLNTAGVILLIICAGKPHIKYPSSF 481
FL T + +C GK +YPS+F
Sbjct: 411 FLETDNNVTTNVCVGKEWYRYPSTF 435
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +1
Query: 145 SIENMVIDYEDDKNSMIALAEQENIHF 225
S EN++ D +DD ++ +++ E E+ HF
Sbjct: 403 SQENVIEDDDDDDDAWVSVDEAESPHF 429
>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/70 (22%), Positives = 32/70 (45%)
Frame = +1
Query: 247 MDSRIKMENSMNMIFFGPVSSFMRIDAESLLHILTFTKKHLIPISRTILIWDLITVRYTC 426
+ + + ++N + P ++ A+SLL I + HLIP L++ I + ++
Sbjct: 111 LQDKTSVNVNVNKLIPIPKKKVLKNRAKSLLSIKSHVHFHLIPFINFFLLYHQIILSHSL 170
Query: 427 GFIQTLLWRH 456
I L+ H
Sbjct: 171 FHISHLISFH 180
>SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -3
Query: 407 IKSHIKIVRDIGIKCFLVKVKMCN 336
IK KI+RD+ K KMCN
Sbjct: 26 IKERAKIIRDVSSLVITRKPKMCN 49
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 82 YNLICILCCITMVHDSIQYTKSIENM 159
YNL+C+ CI + DSI + S++ +
Sbjct: 560 YNLLCVRSCIAI--DSISWISSLQGV 583
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 25.4 bits (53), Expect = 7.8
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = -3
Query: 548 TQPG*FCLLYAPGNRILSIPVRLCNHYPHTTCRHSNVCMKPQVYRTVIKSHIKIVR 381
T+ G CL YA G LSI LC+ P R ++ + ++R I++V+
Sbjct: 104 TRGGQTCLHYAAGKGRLSIVQLLCDKAPE-LIRKKDLQGQTPLHRAAAVGKIQVVK 158
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,924,350
Number of Sequences: 5004
Number of extensions: 64215
Number of successful extensions: 188
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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