Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18j01
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    24   1.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.3  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -2

Query: 294 KENHIHGILHFDSTVHFI--VKVVIKMYIFLFCKSDHRVLIVFIVDHHIFNGF 142
           +E+H   I  F S + FI  V++ + +Y F+  K+D     +      IFNG+
Sbjct: 75  RESHCMTIT-FASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQEIFNGY 126


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 246 FIVKVVIKMYIF-LFCKSDHRVLIVFIVDHHIFNGFRVLY 130
           FI  V    Y+  LFC ++  + +  ++D +  +GF +L+
Sbjct: 418 FIAIVCFVSYLIGLFCITEGGMYVFQLLDSYAVSGFCLLF 457


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 246 FIVKVVIKMYIF-LFCKSDHRVLIVFIVDHHIFNGFRVLY 130
           FI  V    Y+  LFC ++  + +  ++D +  +GF +L+
Sbjct: 471 FIAIVCFVSYLIGLFCITEGGMYVFQLLDSYAVSGFCLLF 510


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -2

Query: 669 LTNKLHINFGI 637
           +T K+H+NFG+
Sbjct: 48  MTEKVHVNFGL 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,021
Number of Sequences: 438
Number of extensions: 4150
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)