Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18i23
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    27   2.4  
SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch...    26   3.2  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   5.5  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    25   9.6  

>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 448 DRKARMDHKARMARTEDTVQGTDRTAHRDHMDIRN*DSPLSSRPSS 311
           D   +++ +A M+++ED +Q    T      D+ N +SP S   +S
Sbjct: 56  DLNRKLNLRAMMSKSEDNLQILKETTSGSSSDLLNIESPASPAEAS 101


>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 248 DASLRAANNGAVLFLVPAEVKARPLMHFKNDTFFVKTAFLRTKA 117
           D  L  A NGA + ++PA V  +P M  ++D F    + +R  A
Sbjct: 88  DKGLEKALNGADVVIIPAGVPRKPGM-TRDDLFATNASIVRDLA 130


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 62  NTKFSSNKPASKQNQRKQ 115
           N KFSSN P  KQ ++KQ
Sbjct: 275 NCKFSSNGPKIKQAKKKQ 292


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 470 MVHAGPCGALPIP 508
           MVH   CGA+P+P
Sbjct: 444 MVHCETCGAVPVP 456


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,694,090
Number of Sequences: 5004
Number of extensions: 25901
Number of successful extensions: 66
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)