Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18i23
         (547 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    24   0.88 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   4.7  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   8.2  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -1

Query: 448 DRKARMDHKARMAR--TEDTVQGTDRTAHRDHMD 353
           DR  R+D   RM    T DT+  TD+ +  D MD
Sbjct: 412 DRMDRIDRIDRMHTMDTMDTMDRTDKMSSMDRMD 445


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 41  LVKLTKNNTKFSSNKPASKQNQRK 112
           L+  +KNNT    +K  +K+N  K
Sbjct: 506 LINFSKNNTIVDISKLVNKRNNAK 529


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 108 VNNGFSSEEGCFDEKCVVLKMHQ 176
           +NNG   EE   D+K  ++K+ Q
Sbjct: 470 INNGLLLEEQRNDDKPFLIKIRQ 492


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 108 VNNGFSSEEGCFDEKCVVLKMHQ 176
           +NNG   EE   D+K  ++K+ Q
Sbjct: 470 INNGLLLEEQRNDDKPFLIKIRQ 492


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,013
Number of Sequences: 438
Number of extensions: 1659
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)